Bant002999.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.311:19808-21858[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9e-05 0.0037 17.0 0.0 2 23 169 191 168 191 0.92 2 14 0.0025 0.1 12.4 4.3 1 23 197 221 197 221 0.97 3 14 1.9e-05 0.0008 19.0 0.5 1 23 227 249 227 249 0.99 4 14 4.3e-05 0.0018 18.0 0.6 1 23 254 278 254 278 0.98 5 14 0.00062 0.025 14.3 0.2 1 23 288 312 288 312 0.96 6 14 0.0006 0.024 14.4 3.5 3 23 319 339 317 339 0.97 7 14 0.2 8.2 6.4 4.3 1 23 345 367 345 367 0.95 8 14 4.5e-05 0.0018 17.9 2.6 2 23 374 395 373 395 0.97 9 14 1.7e-05 0.0007 19.2 4.6 1 23 401 423 401 423 0.98 10 14 9.5e-06 0.00039 20.0 2.3 1 23 430 452 430 452 0.97 11 14 3.2e-06 0.00013 21.5 2.7 1 23 458 482 458 482 0.98 12 14 0.00039 0.016 15.0 0.2 1 23 488 511 488 511 0.97 13 14 0.003 0.12 12.1 0.2 1 23 517 539 517 539 0.96 14 14 0.0026 0.11 12.4 0.6 3 23 546 567 544 567 0.96
Sequence Information
- Coding Sequence
- ATGAACACCGAGAACTGCTGTCGAATCTGCCTTGAAGAGTCTTGTTATGTCGGCTACAACTTCCAAGAATATTCAGGCGACTCAACTATCGGTGAACTTATCAGACGAATCAGCCCAGATATCTGTcttgaaaacaaacCCGACAACATTTGCAATGACTGTCTGATCCAGCTGAAAGCAGCTTGCGACTTCAAACAGAAATGCGAAACATCAGATATGTTCTTGCGCAACATCAACTTTGAACGGAAGTTCCAGATCTTTGACGACGCTGCTGCAATTGACGATCTCTTCATCGATACGAACCTCTTCGACCAGGACTACATTCTAGACCCTGATTACATGGAAGATCCAACTGAAGACTATTTCAAGCCCGACTTTGACAGTCTGGATTCCAAGCAGACGGACTCGAACGAGGCAGAAGTCAGCAGCAAAGGAACGCAAGTCGAAATGCATGTTCACCagacagagaaaagaaaaattaccaGAAATCCGGCGAAGTTTATTCGATGTTCGTTGTGTCCGGAGACGTTCTCAGGTCCGTCAAATCTGATTCAACATGCCAAAGACATTCACAACGACGTGAAACCGTTTAAGTGTTCGTTCCATGACTGCGGGCGGTGCTATCAAAACCCAAAAGGCCTGAAAATCCACCGGCTGCTTCACGAGAATCTCAAACCATTCAAATGCGACGAGTGCCAGGCCATTTTCCATGTCAAAGCCAACCTGCAAGCTCATCTTCGTGTTCACACGGGCGAAAAGTACAAATGCAACTTCGAAGAATGTGAAAAGGCGTTCAGCAGTGCTGCTTATCTCAAACTGCACTTCAAGATCCACACTTTAAGTGACGACACGCCTCGACCGTTCCGGTGCACGTTCGAAGGctgtgaaaaagctttcattgacAGAAATGCCTTGAAATCTCACGGACTGGTCCACGAAGATCGGAAATTTGGTTGCGAAATTTGCAAAACGAAGTTTCGAACCAACCAAAGTCTGAAAATTCACCATCTCAAGCATGTCGACATGAAACAGTTCACTTGCCATATATGCGGCGTGCTGTTCAAGTACAAAAATCAATGCTACGAGCACGTTCGGGCTCACACCGCCAAAAGAGACCTCGAGTGCTTTCACTgctcaaaaaaattcatcaaaaagaCGCTTCTAGTGGCTCACATGCAAACTCACTTGACAGATCGCAAGTTCAATTGCAAAGAGTGCGATAAATCGTTCAAGACCTACTCGTGTCTGTACGCGCACGGCCGAAGACATCAGGCGAGAGTGGCCAAGTTCAACTGCGCATCATGTgacaaattcttcttttcaagATCGGATTTGACGAATCATTTAAGAACTCACACTCAAGAAAAGCAGTTCTCGTGTCACTACGAAGGCTGCACCAAAGTTTTTGTCCACAAAGCGAACCTCAACGTGCACATCCGATCACACGAAGAGAAAAACGGATTTAACTGTGATATTTGCAGCAAAAACCTCGCCAACTCCAACGCTTTACGAGTTCATCTCAACAAAGTTCACAAAGCCGAGAAGAAATTCGCTTGCCAGTCTTGCACAATGCGGTTTGCAAGTCCACAGCTGTTGAAGATCCACGAGGCCACGCACAAACCGAAGAAGTTTGGGTGCACAATGTGCAATCAGCGTTACAACTTTGAAGCTGATTTGAACCGCCACTTGGAGAAAATGCACCAAGATCAGCAGTCAAACACGGTTGTGCAAGAGAAAATCTTGtcgaaaacataa
- Protein Sequence
- MNTENCCRICLEESCYVGYNFQEYSGDSTIGELIRRISPDICLENKPDNICNDCLIQLKAACDFKQKCETSDMFLRNINFERKFQIFDDAAAIDDLFIDTNLFDQDYILDPDYMEDPTEDYFKPDFDSLDSKQTDSNEAEVSSKGTQVEMHVHQTEKRKITRNPAKFIRCSLCPETFSGPSNLIQHAKDIHNDVKPFKCSFHDCGRCYQNPKGLKIHRLLHENLKPFKCDECQAIFHVKANLQAHLRVHTGEKYKCNFEECEKAFSSAAYLKLHFKIHTLSDDTPRPFRCTFEGCEKAFIDRNALKSHGLVHEDRKFGCEICKTKFRTNQSLKIHHLKHVDMKQFTCHICGVLFKYKNQCYEHVRAHTAKRDLECFHCSKKFIKKTLLVAHMQTHLTDRKFNCKECDKSFKTYSCLYAHGRRHQARVAKFNCASCDKFFFSRSDLTNHLRTHTQEKQFSCHYEGCTKVFVHKANLNVHIRSHEEKNGFNCDICSKNLANSNALRVHLNKVHKAEKKFACQSCTMRFASPQLLKIHEATHKPKKFGCTMCNQRYNFEADLNRHLEKMHQDQQSNTVVQEKILSKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -