Basic Information

Insect: Belgica antarctica
Gene Symbol: -
Assembly: GCA_000775305.1
Location: Belgica.361:68227-71695[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.081 3.3 7.7 0.2 1 23 319 342 319 342 0.91

2 10 1.3e-06 5.5e-05 22.7 0.5 1 23 572 594 572 594 0.98

3 10 6.1e-06 0.00025 20.6 2.3 1 23 600 622 600 622 0.99

4 10 3.8e-07 1.6e-05 24.4 1.7 1 23 628 650 628 650 0.99

5 10 0.00026 0.011 15.5 4.2 1 23 656 678 656 678 0.99

6 10 1.6e-05 0.00067 19.3 0.1 2 23 685 708 684 708 0.96

7 10 0.0011 0.043 13.6 2.3 1 23 714 736 714 736 0.99

8 10 3.5e-08 1.4e-06 27.7 2.1 1 23 742 764 742 764 0.99

9 10 1.7e-08 7e-07 28.7 0.4 1 23 770 792 770 792 0.98

10 10 0.00045 0.018 14.8 1.2 6 23 804 821 797 821 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.081	3.3	7.7	0.2	1	23	319	342	319	342	0.91
2	10	1.3e-06	5.5e-05	22.7	0.5	1	23	572	594	572	594	0.98
3	10	6.1e-06	0.00025	20.6	2.3	1	23	600	622	600	622	0.99
4	10	3.8e-07	1.6e-05	24.4	1.7	1	23	628	650	628	650	0.99
5	10	0.00026	0.011	15.5	4.2	1	23	656	678	656	678	0.99
6	10	1.6e-05	0.00067	19.3	0.1	2	23	685	708	684	708	0.96
7	10	0.0011	0.043	13.6	2.3	1	23	714	736	714	736	0.99
8	10	3.5e-08	1.4e-06	27.7	2.1	1	23	742	764	742	764	0.99
9	10	1.7e-08	7e-07	28.7	0.4	1	23	770	792	770	792	0.98
10	10	0.00045	0.018	14.8	1.2	6	23	804	821	797	821	0.92

Sequence Information

Coding Sequence: ATGGAAATTCAACCGCCTCAGAGTGTGCAGAtcaacttcaacaacaaaatcatcaCGTTGCATAATGTCACGATAGTAAAGAACCCGAAGATCGTGACGATCAATGCAACACAAtattcaaacttcttcaaggGATCGCCGGTGAAGTTGGGGAATGCGTCAACCACATCCACTCCAATCAAGCTGCAAATGCCATCGCTGGTGCCGATGAAGACGGTGACCGTGAACGGAACGCCAGTTAGCCTGAAGACCAGTCCGGTCGTCTCGCCCGTCAGTCCAACGACAGCCCCGGTTAACGGCTCGAACGTTGCTTTCAAGGCAAGCCCTCCCAATGGCTCGACGGTGACTTTCAAGAACAACCCAATTGTATTTAATCAAACGCCCGTCATCAAACAAGCTCCCATGATCTCGCCTCAAATCTTCCGAACCGTTCAGAATGGAAAGAACGGAATCGTTCAACTCAAGTCTTCGCAGAACATTGCCACAACTTTCGCAGGATCAACGAGTCCttttaaattccaaacttCACCGGTTAAGCAGCAGCAAGCGCTGCCTgtgaaacaacaacaaacagtGATCATCAGTCCTCCAAAGGGCCCTGCAATCAACTCAGCTCCGGTTAAAATCCAATTGAATCAGCAAGCATCTCCGAGCCTCGTTGTTGCGAAACCACAGGCACCGACTGTGACTCCCAAAGTGATTATGCCAACCACTAAGGCGCCATCTCCAGTATTCAGAGTGACTCAACCAGCTTCAAAGGCGACTCCAGCAGCTTTTCCAACGCCGCCTATTGTCAGCCCTCCTGTTGAAGTTGAATCGCTTGTAAAGAACATGCAGACAACGCCTAGTAAAGCAGTCCGAACAAGATTGATAATCTCGCCATCACAGAAGCACAAAGCTAGCCCTGGCTCGATCTCGCTGCCAAAAGCTAAAAGGCCATGCAAAAAGCTAGACTTCCCGTGCATTTTCTGCGATAATGTATACGATGACTCGAACTTGCTTGTCGAACACATGAAAAAAACGCACACCGAGGTCACAAAAATGGGAATCGTTACTCCGCCAGTGAAGGTACAGAATTCATCGAAAATTTTGTCCAATCCGGTGAAATTAGTTTCTGAACAAAAGCCAGAAGTGAACATTAAAGTTGAATTATCGGAGAACGGAGACTCTGACGACGGTGACGACGACGAAAGAGAAGTGAACGATCTCATCATGGACCTAGAAGAGACACAAGGCACCGCCGCCTTCAATCAAGACCGTAGCGAGTCGCCAGAATCTCCGGAGTTTGAAGAACACGTGCCATTGACCATCGTCAAGAAGGAAGATCAAGAAAATGTCGATCACAACATGAACGAACAAAGTGAAGATGGCTTCGATTACGGTaactttgaatatttctcGAACATCCTGGAGCCGATTTGCGAGTTGAGCTGTGAAGACGACTCCGACGACGGTGTTCAAGATGAGAACGAGGCGATGAGACTTTACCGCGAAGCCATGGAAGTGAACTATCAGCAGAACGGAATCAAGAAGCGCGGGCGACGGAAACAACGTAAACCCAAGCCACTTATGGAGAACATGACTTCACTCAACGGCATTCTCGCCGGCTTGCTAGACAACTCAATCAAGGTTCCCCCGGGACCGGGTCGTGGCCGGCGGAAAGAGatgaacgaagaagaacttcaGCTTGACCGCAGTAACGGCGTTTGTCTGTTCAGCTGCAATAAATGCGACGAGTCATTCAAATACGCTGGTGACCTCGCCAAGCACGTTAGATCTCATACCATCAGCTCTCCTTACCAGTGTTCCATTTGCCAAAGGAAGTTCACGCACATTGGAAGTCTTAACACTCATCTTAGGATCCATAGTGGCGAACGACCTTACAAGTGCAACCAATGCGACAAAAGCTTCACCCAGTCGAATTCGCTGATGGTCCACGTCAAATCGCATCTCTCCAACAAACCTTTCCAGTGTCATCATTGCAATAAAGGCTTCCTGAATGCATCCAGTCTAGCGCTCCACACAAAGACACACACCGGGCCGACGACGGTGACGTGTCCGATCGACACCTGCGGCAAGGAGTTCCGCGACAACAATCTTCTCGAAGAACACATAATGACTCATCGACAATCCATGCTCTACCAATGTTCGCTGTGTTCGGAGAAGTTTGAGCAGAGTTGTTTGCTGGTGCAACACGTTAAGTCGCACATCGGCGACAAGCCGTTCCAGTGTAATCAATGCGGAAAGTGCTTTACCCAGCCTGGCAGCTTAAACACTCATTTAAGGATCCACACAGGAGAAAAGCCGTTCGAATGCAACATTTGCGGGAAGAAATTCACTCAAGCTTCGAGTTTGAGTGTTCATATGAAGGTTCACAGCGAGAAAGAGTTCAAATGCATCATGGAGAGTTGCAAAAAGTCTTACAGCCAGGAAGCTTATTTAAAAAAACACATGCAGAAGCACATCGAGGCGTCGCTGAACGACGAGAACAACCTTCTGACGCATGAGTAG
Protein Sequence: MEIQPPQSVQINFNNKIITLHNVTIVKNPKIVTINATQYSNFFKGSPVKLGNASTTSTPIKLQMPSLVPMKTVTVNGTPVSLKTSPVVSPVSPTTAPVNGSNVAFKASPPNGSTVTFKNNPIVFNQTPVIKQAPMISPQIFRTVQNGKNGIVQLKSSQNIATTFAGSTSPFKFQTSPVKQQQALPVKQQQTVIISPPKGPAINSAPVKIQLNQQASPSLVVAKPQAPTVTPKVIMPTTKAPSPVFRVTQPASKATPAAFPTPPIVSPPVEVESLVKNMQTTPSKAVRTRLIISPSQKHKASPGSISLPKAKRPCKKLDFPCIFCDNVYDDSNLLVEHMKKTHTEVTKMGIVTPPVKVQNSSKILSNPVKLVSEQKPEVNIKVELSENGDSDDGDDDEREVNDLIMDLEETQGTAAFNQDRSESPESPEFEEHVPLTIVKKEDQENVDHNMNEQSEDGFDYGNFEYFSNILEPICELSCEDDSDDGVQDENEAMRLYREAMEVNYQQNGIKKRGRRKQRKPKPLMENMTSLNGILAGLLDNSIKVPPGPGRGRRKEMNEEELQLDRSNGVCLFSCNKCDESFKYAGDLAKHVRSHTISSPYQCSICQRKFTHIGSLNTHLRIHSGERPYKCNQCDKSFTQSNSLMVHVKSHLSNKPFQCHHCNKGFLNASSLALHTKTHTGPTTVTCPIDTCGKEFRDNNLLEEHIMTHRQSMLYQCSLCSEKFEQSCLLVQHVKSHIGDKPFQCNQCGKCFTQPGSLNTHLRIHTGEKPFECNICGKKFTQASSLSVHMKVHSEKEFKCIMESCKKSYSQEAYLKKHMQKHIEASLNDENNLLTHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -