Bant010241.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.254:76711-79688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.8 1.6e+02 2.4 0.0 2 23 7 28 6 28 0.87 2 24 0.00018 0.0075 16.0 4.8 1 23 34 56 34 56 0.97 3 24 5.1e-07 2.1e-05 24.0 0.2 1 23 62 84 62 84 0.96 4 24 2.7e-07 1.1e-05 24.9 1.1 1 23 91 113 91 113 0.99 5 24 0.086 3.5 7.6 0.7 2 19 124 139 123 143 0.65 6 24 0.00014 0.0059 16.3 0.3 1 23 149 174 149 174 0.94 7 24 0.049 2 8.4 0.7 5 23 186 204 180 204 0.91 8 24 0.00012 0.0051 16.5 2.3 2 23 208 230 207 231 0.95 9 24 0.076 3.1 7.7 0.7 1 23 236 260 236 260 0.96 10 24 0.25 10 6.1 3.4 2 23 415 437 414 437 0.91 11 24 0.056 2.3 8.2 2.8 1 23 443 466 443 466 0.96 12 24 3.3e-06 0.00014 21.5 1.4 2 23 473 495 473 495 0.95 13 24 0.00046 0.019 14.7 1.7 1 23 500 523 500 523 0.96 14 24 2.9e-05 0.0012 18.5 1.3 1 23 529 552 529 552 0.91 15 24 5.6e-05 0.0023 17.6 4.0 1 23 562 585 562 585 0.95 16 24 0.032 1.3 8.9 1.1 1 23 596 619 596 619 0.91 17 24 0.005 0.21 11.5 0.9 2 23 628 649 628 649 0.97 18 24 3.7 1.5e+02 2.4 0.1 1 23 653 675 653 675 0.92 19 24 0.00015 0.0062 16.3 1.8 1 23 685 707 685 707 0.98 20 24 0.055 2.3 8.2 0.4 1 23 714 736 714 736 0.92 21 24 1.5e-05 0.00061 19.4 0.5 1 23 742 764 742 764 0.98 22 24 0.0061 0.25 11.2 0.8 1 23 770 792 770 792 0.97 23 24 0.59 24 5.0 1.5 1 13 799 811 799 813 0.90 24 24 0.00086 0.035 13.9 9.5 1 23 828 851 828 851 0.96
Sequence Information
- Coding Sequence
- ATGGATTCTGACTCGATCGTGTGCGAAGTGTGTGGCGATGTTGTGAAGATGAGTTTACTCGACAAGCATATCAGACTCGGCCACCGTTTGAAGCCCGAATACAATTGCAACCTCTGCCAGAAGCAGTTCACGAGCCGTTTTAATCTCCGTTATCACATGGCTCATCACTTCAACGAAAGAAACTTCCTGTGCAACGAATGCCCAAAGACCTACAACACTGCTTCTGATCTTGCCCAGCACATGCGAATTCACGAGAAGGCGCACGAGCCTTACACGTGTGAAATTTGcgggaaaattttcagaatCCAAAGTAAACTTCGCACCCATATGAAATCTCACAAGTCGTCTTTGGAGCCGAAAAGACCACAGGAGTGCTCGATTTGCAATAAGTCATTCGTGAGTTTGTTGAGCCATCACGCAACCGTCCATCTCAAAATCCGAAAATACAAATGTGAAGAGTTGGCATGTGGAAAGAGTTTCGGAAAGAAATCTGGGCTCACCAGGCACAAAAGCGTGATCCATGACAAGCTCAAGCCGTTCAAGTGTATCTTCAAGAGATGCGAAAGAGCTTTTGGTGAAAAAGCTCAGCTTTCAAAACATCTGAAAATACACGCTGAAAAGTACTGCAAACTATGCCCTCAAAAGTTTGAGCGATGGAAATCGCTAAACGATCACATGAAGCAAGCACATCACGGAGACAAGCAGTACTCTTGCGACTTTTGCACAAGAGAGCGAGTCTTTGTGAACCTGAAGGCGTTCAAAAATCATCTTGCAATGCACACCGATCACTTCCCGCTACAGGAAGATGTTGAAGATTATTGCGACATCGAGTTTGCATCTGCATGTTTATCTGCCGCTGACCAGAGCGAGGACGAAAAAGAAACTCCAATTGACGTGAAACCTGAAGAAGTCTTTGAGAACGACGCTGCTGTGTTCCAAGACGAGATAGATCTGCCCCCAGAGCCacaacaagattttcttcttgaaatcaaagaagaagttcTCAGCGATGATGAAGTTAAGGCTGTCAGTACAGACACACTCGTGATGACAATAAAGGCTGAGCCTGAAGAATTTGCAGCCACAGCCTTTGTGCCACCGGTCGAGATTCCGCAATGCAAAATTAAGTCGGAGCCAGAACTCATTATCTTCGACGACGATCGACCGAACTTGAATTTGCTTATGGAACAATATGCTAAACTTCCAGAAATGGTTTCCACGGAAAGTGATATCAAAATGCTGAAATGCAATCAGTGCCAGAGAATTTTCCACAACCAGATGATGTTCGATCGGCACAACCAGCTTTTCCACGAGAAGTCGATTAATCATCAATGCACTAAATGCACGGATACTTTCGACTTGAAGTTTGACTTGGAACGTCACTTCAAGATCGCACACACCGGAGTCAAGACTCGAACGTGTGACATctgcaacaaaagcttcaagaaaaagaaaaatctccaGATGCATGTCAGAGCTGTTCACTGCGCGAAGAACTTTGAATGCCCTGATtgtggaaaaaagtttccgttcaaGTGCAGTCGAGATCGCCACGTCAAGGTCGTCCATCTGAATCAACGCGATTATCAGTGCAATGTCTGTCAAAAATCGTTCGGAACCAAGTCAGACATGCGCAACCACGTCGCCTTCTTCCACAATTCAAATCCTGATGACAAAGGAAAGCATTACTGCTCAATGTGCGACAAGTCGTTCGTTTCATCCCGAACACTGCTGCGTCACCACAGAGGCGTGCACGAGAATATCAAACAGAAAAGACCACGTTTCTACCGCTGCAAATACTGCAAAGAAAGTTTGCCGAACAAGTACCAGAAAGATAAACACGTCGCACAGGTCCATCAAGATGGTTTGAAGCCGCTTCGAACTTGCAAAACCTGCAATCTCGATTTTACGCTCTACGATGACTTCATGAACCACATCAACTCGCACGAAGAGTCCTTCATCTGCTTGATCTGCGGCCTTGACAATGAAGACCAGAAATCGATGGAAGCTCACAGCGAAACCCATCGACACATCGACTTGGAGCTTCGACGATACGTTTGCGACTTGTGTGGACACAAACTATTCAACAAGATTCAGCTTACAGTTCACATGCGCAAACATATGGAAGAAACCAACTTCTACGTTTGCGACGTATGTGGACAGAGTTATAAATTCATTGCGCCGTTTTTGtatcacaaaaagcttcatgAAGGCAAGAAGGACTTTATATGCGCTCATTGTGGAAAAGAATTTATGAGGAGACCAGACTTGATCGTCCATGTTCGCAGGCACACACAAGAAAAGCCTTTCAAgTGCAAAGTCTGTGAAAAACGTTTCGCAGCAAAGCAAATTCTATACATTCACCTTCAAACACATCCCGAGACCCGAAAGGTCTACGAGTGCAAGAAATGCCACCTGAAATTTGAAGACAAGAACAAGTCAATCTTCCATGACGAAAAAGTCCATCCAGATCGCCGACCGTTCCGGTGTCAGCACTGCAAGCAGTCGTTCACGAACCAGCATCTGCTGAAGATTCATTTGAAGCACAAACACAAGCAGGGAGAAAACATTAAAGAAGAGTTCGTTGTCATTAAAGCTGAACCAATACAAACTGAATTCATGTACAACAGCTTGGATCAgtaa
- Protein Sequence
- MDSDSIVCEVCGDVVKMSLLDKHIRLGHRLKPEYNCNLCQKQFTSRFNLRYHMAHHFNERNFLCNECPKTYNTASDLAQHMRIHEKAHEPYTCEICGKIFRIQSKLRTHMKSHKSSLEPKRPQECSICNKSFVSLLSHHATVHLKIRKYKCEELACGKSFGKKSGLTRHKSVIHDKLKPFKCIFKRCERAFGEKAQLSKHLKIHAEKYCKLCPQKFERWKSLNDHMKQAHHGDKQYSCDFCTRERVFVNLKAFKNHLAMHTDHFPLQEDVEDYCDIEFASACLSAADQSEDEKETPIDVKPEEVFENDAAVFQDEIDLPPEPQQDFLLEIKEEVLSDDEVKAVSTDTLVMTIKAEPEEFAATAFVPPVEIPQCKIKSEPELIIFDDDRPNLNLLMEQYAKLPEMVSTESDIKMLKCNQCQRIFHNQMMFDRHNQLFHEKSINHQCTKCTDTFDLKFDLERHFKIAHTGVKTRTCDICNKSFKKKKNLQMHVRAVHCAKNFECPDCGKKFPFKCSRDRHVKVVHLNQRDYQCNVCQKSFGTKSDMRNHVAFFHNSNPDDKGKHYCSMCDKSFVSSRTLLRHHRGVHENIKQKRPRFYRCKYCKESLPNKYQKDKHVAQVHQDGLKPLRTCKTCNLDFTLYDDFMNHINSHEESFICLICGLDNEDQKSMEAHSETHRHIDLELRRYVCDLCGHKLFNKIQLTVHMRKHMEETNFYVCDVCGQSYKFIAPFLYHKKLHEGKKDFICAHCGKEFMRRPDLIVHVRRHTQEKPFKCKVCEKRFAAKQILYIHLQTHPETRKVYECKKCHLKFEDKNKSIFHDEKVHPDRRPFRCQHCKQSFTNQHLLKIHLKHKHKQGENIKEEFVVIKAEPIQTEFMYNSLDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -