Bant004288.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Belgica antarctica
Gene Symbol
su(Hw)
Assembly
GCA_000775305.1
Location
Belgica.51:68289-75896[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 7.5e-07 3.1e-05 23.5 0.9 2 23 171 192 170 192 0.97
2 14 0.0079 0.32 10.8 1.1 1 20 198 217 198 220 0.95
3 14 1.1e-05 0.00046 19.8 1.2 1 23 226 248 226 248 0.98
4 14 0.00055 0.023 14.5 3.2 1 23 253 275 253 275 0.97
5 14 2.2e-06 9.1e-05 22.0 0.6 2 20 368 386 367 387 0.95
6 14 2.3e-05 0.00094 18.8 0.4 3 23 403 423 401 423 0.97
7 14 1.5e-06 6.2e-05 22.5 0.6 1 23 433 455 433 455 0.99
8 14 2.7e-06 0.00011 21.8 0.1 1 23 461 485 461 485 0.99
9 14 4.9e-07 2e-05 24.1 0.5 1 23 491 513 491 513 0.99
10 14 6.6e-06 0.00027 20.5 3.8 1 23 519 541 519 541 0.96
11 14 0.00029 0.012 15.4 0.8 2 23 548 570 547 570 0.91
12 14 8.2e-06 0.00034 20.2 1.9 2 23 577 598 577 598 0.97
13 14 2.8e-05 0.0012 18.5 0.4 1 23 604 626 604 626 0.97
14 14 0.029 1.2 9.1 5.3 2 23 633 655 633 655 0.97

Sequence Information

Coding Sequence
ATGGATTTCGAAGCAGCAATTCGTGAAGCTTACAAGCAGCAGAAGCACAGCAAGTGTGTTGAACTGATCAACTCAGCGCCCGATGAATTGACAAGCTCGAGCCAGTACAAGATTCTCAAAGCCTCGTGTCTGAACAACATCACTGGCCAGTCAAAGGCAGCCCACTTGGTACTGGACGAAGTCATAAACAACGAGGCAGGCAATGCTTTCGCTTACTACGGAAAAGGTCTGGTGTTCATCAACGAAGCTAAGCTCAACGAGGCTGTGAAGTGCTTCGACCAGGCAATCGAGCTGGAACCGAGCGAGAAGATGGAGAAGGCACGGCAGATGAAGGCTCGCGTTCTAAACATGTTGAAgccgatgaagaaaaaagagacAGCGGTGCCTGCATTGAAGAAGTCTGCCACACCGGTGCCTTCAGCGGTTAAACAGTCTGTCACACCGGTGCCTTCACCGATTAAGAAGTCGGTGCTCATCAAGACCATCCAACTTTCGAAGAAAGTTACATCGACGTGTCCGATTTGTGAAAAAACCTTCGACAAGAAAAGAAACCTTTCTCGTCATATGCTCATTCACTCCAATAAGAGGCCGTTCTCTTGCGGAATATGTGAGCGGGGCTTCCTTCAGAAATCAGACCTAAACCGTCACGTCGCTTGTCACTCTGATGTTACCAACTTTCCCTGCACCTTGTGTGAAAAGGGATTTAAAACGCAGAAAAGCCTCAAGTATCACCTCGCCACTCATTCCGAGCGACCCTTCAAGTGCGAGCAGtgtggaaaagctttcaaccaAGCTCGAACACTGGATTATCACTGCAGAACTCACAAGTATCTGCcactgaagaagaaactggATAACAATCAGACCAAGAAGACTCCAGTGAAGAATCCCAGCGCGGAAGAATACACGCAACATGCCTGCACAGCTCAAAGTTCTTACGAGGTGCTGACTGTCGAAGAGCCTGCTTTTGAGAAAGAAGATGAGTCGCCGAGTGAAGAACAAATCGAGGTGGAGCTGGAAGTTAAACAGAAGAAGCCGCGAAAGCCTTACAAGAGACGTCAAAAGAAGAACGAAGCTGAGCAGCCGCCAAAGGAACCGGTTCAGTGTGTGACTTGCGGGAAGTCTTTCACAAGAAAATATCACCTCGAACGTCATCTCGTGCACACGAGCTGTAATCCTGGCACTTACGAGAAGCAAGAGTTTGGCTGCGAGGTGtgcgaaaagaaattttcacgaatTGACAATCTGCGAATGCATTTGCGCGGCCATCTGGGCCAGAAAGTTCGATCCAGAGACTTCCAGTGCCCGTTTTGCGAAAAGAGCTTTTATGGGTCGTCGCTGCTGAACATTCACGTTCGCACCCACACAAAAGAGAAGCCATACAAGTGCAAATGGCCAGAGTGTGGTCGTGGCTTCCCGTCATCCGGAGCTCTCACCAAGCACACGCGCGTGCACACCGGCGAACGACCTTACAGCTGCCCGATGTGCGATAAACGCTTTGCAGCCAAGGAAACGCTGAATCGCCACGTGCGCACTCACACCGGCCGACGAGACCACAAGTGCAGCATCTGCGGCAAGGAATTTATCCAGAACACTCAACTTCGAGCTCATATGTTCCACCACAACGGCGAGAACGCCATGACCTGCGACCTTTGTGGCAAACAGTTCAACAGGAAGACGAGACTAAGAGAACATATCGATTTCATCCATCTCAAcAAGAAGATGCCGGAGTGTCACATGTGCAACAAGGCGTTTATGCGCAAGGAAGATTTGAATCGTCATGTTGAAACCCACGTTGGGAACCGAAACCACAGCTGTGCCAtctgcgaaaaaaaattcgtcACTCGAGCAGCTGTCCGGATTCACATGCGCGTTCATCAAGTTGAAGAGCCAGCTCGATGCAGCTACtgtttcaagaaattcctGAGAATGGACTGCCTTGTCCGCCACATGCGCTCAAAGCATCGCGAAGCACTCCAGGAAATAATCATCGAGGCAGAAAGCAAGAAGATCATGAAGCAACAGAACGGCGAGGTCGAAATCATCTACATGGCTGATGATCAGCAGTCCCAAACAGACGAAGAAGTATTTCTTGTGCAAATGCAAGACGACGAAGACTATGAAGACGAATCCTTCGCGCCAATCTTCCTTGACGACCAGCTGCTGATGCAACGAATATCGGAACTCCTTCAAATCGTCATCGAAGAAAGCTTGCTGAAGGACCTCGGCTTCGGAACAAAGCCCGTCGATGAAGTTCTGTGTTCGGTGCTTGAGCAATGTAGCCGGCGACCAATCAAAAGCGGCCAAGGTCCCGACGACGAGTCCACCAGAATGCGAGAGAACACAAAACTGCTGTTCTCCCTAGTGCTCGACGAAGAACACATCAAATCACTGTTGAACAACTACACGGTCGATGAAGTTATCACGATCGTGCTACGAATGGCCAAGTGA
Protein Sequence
MDFEAAIREAYKQQKHSKCVELINSAPDELTSSSQYKILKASCLNNITGQSKAAHLVLDEVINNEAGNAFAYYGKGLVFINEAKLNEAVKCFDQAIELEPSEKMEKARQMKARVLNMLKPMKKKETAVPALKKSATPVPSAVKQSVTPVPSPIKKSVLIKTIQLSKKVTSTCPICEKTFDKKRNLSRHMLIHSNKRPFSCGICERGFLQKSDLNRHVACHSDVTNFPCTLCEKGFKTQKSLKYHLATHSERPFKCEQCGKAFNQARTLDYHCRTHKYLPLKKKLDNNQTKKTPVKNPSAEEYTQHACTAQSSYEVLTVEEPAFEKEDESPSEEQIEVELEVKQKKPRKPYKRRQKKNEAEQPPKEPVQCVTCGKSFTRKYHLERHLVHTSCNPGTYEKQEFGCEVCEKKFSRIDNLRMHLRGHLGQKVRSRDFQCPFCEKSFYGSSLLNIHVRTHTKEKPYKCKWPECGRGFPSSGALTKHTRVHTGERPYSCPMCDKRFAAKETLNRHVRTHTGRRDHKCSICGKEFIQNTQLRAHMFHHNGENAMTCDLCGKQFNRKTRLREHIDFIHLNKKMPECHMCNKAFMRKEDLNRHVETHVGNRNHSCAICEKKFVTRAAVRIHMRVHQVEEPARCSYCFKKFLRMDCLVRHMRSKHREALQEIIIEAESKKIMKQQNGEVEIIYMADDQQSQTDEEVFLVQMQDDEDYEDESFAPIFLDDQLLMQRISELLQIVIEESLLKDLGFGTKPVDEVLCSVLEQCSRRPIKSGQGPDDESTRMRENTKLLFSLVLDEEHIKSLLNNYTVDEVITIVLRMAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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