Bant010481.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.1351:121-3830[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-08 2.5e-05 23.2 0.0 3 39 187 223 186 228 0.88 2 2 6.7e-06 0.0061 15.6 0.0 6 39 346 379 341 382 0.81
Sequence Information
- Coding Sequence
- ATGAGTCACGAACTGCTAAACCACAAGACCAAGTGCCGGTTATGCTTTCAGCGCATCAGTGTCAGTCGAAACACGTCGAGAATCACGGCGACGattcagcaaaagtttttcagcctGACAAACATTGAGCTTAAATCATCGGACAAGTTCTCGAACTGTATCTGCAAGACATGCATTCAATCACTGAACGAGTCGTCAGCGTTCCAACTCAAGATGATCGACAACCAGCAGCGACTTTACTCGTTCGAAGGCGAAACAGTCGCTGGCATGATCAAGGAAGAACCATTAGAGCTGCAGCCAATCGAAATGCAAGATCACAGGTTTGGAACTGCGATCGCATTCAAATCAGAGGTATTTGAAGACAACTGGCTGACAAGTCCGGCAACTGAAGAGACAGAACTGGATGAATCAACATTGCCCGATGATGCAAGTTTGGACGAAGCAATAACATCAGCTTCATTGCCCGATAATGCAAGTTTGGATGAAGAAGCCGATGTACATGATGCAATGGAGGAAACTGCGAATCTCAGGAGAAAACCTTGGAGTAGATGCCCTGCTGAGCATATCATCAACGCGGTTGAAGCAGTTGCAAGCGGCGAATTTACAATTCGCGCtgcatcaaaacattttcaagtgcCAGAGTGTACAATTCGAAAGAGAgtcaaacaagattttcatttgctgACCGACCAAGAGgaacttcaagtgaaaatctttgtcAACAAGCGTGCCGAGTCTGGAATCTCGTGCAGCGACGAAGACATCAGCAAGAGTGTTATGCAAATTCTACAGAAACGTAGAGGAAAAGACAAAGTCAAGATGAAGAAGCTGTCAAACACTTGGTTGGCTTCATTTCGCAAGCGTAATTCTGACATGGCTGTTGCTGATCTAAGCACAAGCTTCGAGTATAGCTGTGACTTGTGCGGCTCGCAGATGACAGACAAGAGAAACCTGAGAACACACATCAGTATGCACGCAAAGAGTTATGAGATCGAAGCTCCACCTAAAATCCGCCAGTACACAAAGGCGTCGTTGGAAGAAGCGATGACTTTGGCTCTAGCCGGAGAAATGTCAATTCGGAATATATCGGAGTTGTACAACATTCCTACAGTAACTTTGAGGAAACACCAAAAAACCCAAAGACAACCGCCAATCGAAGGAATCCACAAGTGCTCGTACTGTGATAAGACCTTTGGACGCGCAACCAGCAGAAGAAACCACGAAATATATTCTCATTTGACTCCAGTCGGCGCATTCCCTTGTGAAGAttgtggaaaagtttattcgaCCCAACCTCGCCTAAGAATGCACATCAAATCAGTTCACCACGTTGGCATCTTCAAATGCTTCGAGTGCGGCGAAGCTttccaaaaagaaaacttcttgaacaaCCACAGAGTGAAACACAGACAGAAGATTCCTTGCGAGATGTGCGGCAAATTTGTTGCCGTTGGCACAGCTTACACGTCTCATTTAAAAACTCACGGACCTGCCAAGTTCAAATGCACCTCCGAGGGATGTTCTAATGCTTNNNNNNNNNNTAACTGGACTTGA
- Protein Sequence
- MSHELLNHKTKCRLCFQRISVSRNTSRITATIQQKFFSLTNIELKSSDKFSNCICKTCIQSLNESSAFQLKMIDNQQRLYSFEGETVAGMIKEEPLELQPIEMQDHRFGTAIAFKSEVFEDNWLTSPATEETELDESTLPDDASLDEAITSASLPDNASLDEEADVHDAMEETANLRRKPWSRCPAEHIINAVEAVASGEFTIRAASKHFQVPECTIRKRVKQDFHLLTDQEELQVKIFVNKRAESGISCSDEDISKSVMQILQKRRGKDKVKMKKLSNTWLASFRKRNSDMAVADLSTSFEYSCDLCGSQMTDKRNLRTHISMHAKSYEIEAPPKIRQYTKASLEEAMTLALAGEMSIRNISELYNIPTVTLRKHQKTQRQPPIEGIHKCSYCDKTFGRATSRRNHEIYSHLTPVGAFPCEDCGKVYSTQPRLRMHIKSVHHVGIFKCFECGEAFQKENFLNNHRVKHRQKIPCEMCGKFVAVGTAYTSHLKTHGPAKFKCTSEGCSNAXXXXNWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199427;
- 90% Identity
- iTF_00199427;
- 80% Identity
- iTF_00199427;