Bant005359.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.72:101520-103577[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.00014 20.7 0.0 3 44 228 268 228 269 0.95 2 2 8e-07 0.00073 18.5 0.0 4 39 308 343 307 347 0.88
Sequence Information
- Coding Sequence
- atgGAGTCCTATCAGTTCAGCTTTCAGAACGAAAAGCATCTGATTGTCTCGTGCAAAGACCTGTATGATAGCCTCAGCGATGCCGACGTGatttttgtttccaaaGAGAAACACGAAGTTAAAGCGCACAAACTCGTCCTGAGCCTATCATGCGGCTTTTTCAGAGATCTCTTCAACAGTGTGGGAACAGAAGTCCACAAAGTGATTTTGCTACCAAACTATTGCAGCGACTCGGTCCAagcttttgtgcaatttttctaCACGGGAGAGATTTTGATTCCTGAGAACCGAGCAGCTGAGTTCGCCAGTCTGTGCCATGAGTTCAACATGAGTGATGAGATTCCTGTAATTAAAACGCTCATAAAGAACCACAAGAAGAAAGTTGTCACGGATGAGGCTGATCTTTCCATAATTGAAGTCCCGAAAATGGAATTCGACGACTACTTCCAGACAAACGAACATGTtgagacaattttctttaacgAGACTGACCCGGAGTTCATCGACCGTGACATCGAATCAAAGAAACCTGAAGAATCCATCAAAGAAGAATACTTAAACGTCCAGTACATCGACGACAACCCAAATTTCGAGATGATAGAAGAAGCTGACAAGGGCGAAGAGTCGTTGGATGGATCAATTGAGCAAAAAGACGAAATTCCACAAACGCCAGAGTTTCTAGAGAACCTGGATATGGCAGCTGAAGACGTAAGAAAAGGGATGAGTTTCTGGAACGCACACAAGAAATACGGAGTGGCTCGGGGAATGATTCTCAAGCACttgcaaaagaaaactgaacttCAACAAGCcaaaaagaagttgaagaaaacacTCGCCGCTGCAGCAGCTCTACCAGTGACCTTCCCAGCACTTCCCGTGAACATCGCCCAACTCAGAGCAGAACAAGATCGGTTCAAGAAGCGACTGCAGGAAGCGATCAACTCTTGTCGTGACACTGGAAACTCACCCAAGAAAGCAGCTCGACTGTTCGGTGTGCCTGTGGAAGCAATCGAGAGAAGCCTGAGAGGGTTCAAGAAGAACGTTCATGTTTGA
- Protein Sequence
- MESYQFSFQNEKHLIVSCKDLYDSLSDADVIFVSKEKHEVKAHKLVLSLSCGFFRDLFNSVGTEVHKVILLPNYCSDSVQAFVQFFYTGEILIPENRAAEFASLCHEFNMSDEIPVIKTLIKNHKKKVVTDEADLSIIEVPKMEFDDYFQTNEHVETIFFNETDPEFIDRDIESKKPEESIKEEYLNVQYIDDNPNFEMIEEADKGEESLDGSIEQKDEIPQTPEFLENLDMAAEDVRKGMSFWNAHKKYGVARGMILKHLQKKTELQQAKKKLKKTLAAAAALPVTFPALPVNIAQLRAEQDRFKKRLQEAINSCRDTGNSPKKAARLFGVPVEAIERSLRGFKKNVHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199214;
- 90% Identity
- iTF_00199214;
- 80% Identity
- iTF_00199214;