Bant005352.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.72:103638-105465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0003 0.27 10.3 0.0 3 41 248 289 246 293 0.76 2 3 0.00034 0.31 10.1 0.0 8 35 303 329 301 338 0.79 3 3 8e-10 7.3e-07 28.1 0.0 2 38 356 391 355 394 0.93
Sequence Information
- Coding Sequence
- ATGTCGTTCGTTATCAACACCACGGTTGATAAGAACCAGGAGCTGCTCGAGGCGTACAAGGAACTGTACGAGAACGAAGCCGAGAAAGACGTTTACTTGAtctccaaaaatgttttcatcccCGTCGATTCTTTCGCTTTGGCGCTCTCTTCTGAGTTTTTCAAGAACCTGCTTAGCGAGAACAAGCGAGACACGGTTAATATAGTGATTCCAGACGTGGAGCCAACAATTCTGAAGAAAGTCGTCGAGTACATTTATTTTGGAACAGTCGAGCTTGAGCCCAAGTTCATGGCAGATTTCATCGAAGCTTGCAATCTTCTGCAGCTGAAAGCAACGATCACTTGCGAACGAAAACTGGTTTTCGACCAGAAACTACGAGATCCTACTGCATTCGTCGCCAATCCTTCAACATCGACACCAGTGGCAACTGCCTCACCGAAGTCCAGACACCTCGAGTCGCTCATTTCCCAAATCGACGCAGACGAAAGCCAAGACTACATCATGAAAGAGGAACAAATCGACGAGTCTGGAGAAATTGTGGAAGTTTACGAGATCTCAAATCTGCAGGATGGAGAAATCAGCTGCGAAGACGCTGATGGAGACGACAGCCAAATGTATGAAGAGAGCTACGAGCTAATGAACGTGACAGACATCAAGACGGAAGGCATGGACATGAAATCGAGAATCAAGATCGACGGCAAAATGAATCGACCACGAGCACCGCCCAAACCAGTCGACGaagaattgatgaaaatcgCTATCCAGGAAGTCATCTCAAACGCAAACAGtTCCAGCTTCAGAATTGTCAGCGAGAAATATCAGATCCCGAAAACTCTCTTGTGGCGACGTGCAAAGAAAGAAGGGTACATCAAAAGCGAGAAGCTGAAGAATCCTTTGAGAATGCTGGCAATCGAAGAGATCAAGCAGGGCGAGAGTCTCATCAGCTTGAGCAAGAAGTACAACATCCCGATCTCCACATTGCAccgtgaaaaattgaagctcTACGAGAAAGGGCAGCTGCCAGAAAGTGTGAACTTGAAGAACCGTTCTCGTGGCGAAGATTACGACGACCGCCTTCGCCTTGCCATTTCCGAGATTCTCAACGGCAAAAGCCAGAACGAAGTGGCCAAGAAATACAACATCCCGAAGACAACGATCTGGCGAATCATCAAAAAGATGGATCCAGGATTCAAACAGGCCAGCCAGCTCTCTGAAATCACTCCCAGTTCTCAGATCGTCGACTACTTGCTGGAGCTGAGTAAAAAACGCGTCATCaaggaagaaatcaaagaagaaagcgaagaaggCAAAATGAAGATTGTTTTCGTGAACCCAGCCGACTCAATGCAGATCAATGACTCCAGTTCATTACAGTGA
- Protein Sequence
- MSFVINTTVDKNQELLEAYKELYENEAEKDVYLISKNVFIPVDSFALALSSEFFKNLLSENKRDTVNIVIPDVEPTILKKVVEYIYFGTVELEPKFMADFIEACNLLQLKATITCERKLVFDQKLRDPTAFVANPSTSTPVATASPKSRHLESLISQIDADESQDYIMKEEQIDESGEIVEVYEISNLQDGEISCEDADGDDSQMYEESYELMNVTDIKTEGMDMKSRIKIDGKMNRPRAPPKPVDEELMKIAIQEVISNANSSSFRIVSEKYQIPKTLLWRRAKKEGYIKSEKLKNPLRMLAIEEIKQGESLISLSKKYNIPISTLHREKLKLYEKGQLPESVNLKNRSRGEDYDDRLRLAISEILNGKSQNEVAKKYNIPKTTIWRIIKKMDPGFKQASQLSEITPSSQIVDYLLELSKKRVIKEEIKEESEEGKMKIVFVNPADSMQINDSSSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199213;
- 90% Identity
- iTF_00199213;
- 80% Identity
- iTF_00199213;