Bsom014840.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755177.1:17868853-17881743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.33 49 5.9 0.6 2 21 1714 1733 1713 1734 0.87 2 7 0.00034 0.05 15.3 0.4 2 23 1834 1855 1833 1855 0.95 3 7 0.0018 0.27 13.1 4.1 1 23 1875 1897 1875 1897 0.97 4 7 0.00061 0.09 14.5 5.7 1 23 1934 1956 1934 1956 0.98 5 7 0.028 4.1 9.3 5.9 2 23 1983 2004 1983 2004 0.95 6 7 0.0057 0.84 11.5 0.7 1 20 2024 2043 2024 2044 0.96 7 7 0.72 1.1e+02 4.9 1.2 5 23 2394 2413 2391 2413 0.90
Sequence Information
- Coding Sequence
- ATGGATAGATTGAATCAATTGAAAGGGGAACCAGGGGCTTCCAGGGACTCCACACTCGATGTGAGCTCGCCGCTGAGCGAAGCTTACCTCACGGCAAATGAGAGCTCATCAAAATACTTCTCTTTGTCTGAAGAGGATTCAACATTCGACATAAATCCTACGAAGGATGAGGAGCGACCTACATCTGATTCGGACCAATTAATCTCCAATTTATCACCGATTCCCAAAAAGAATGACATCGGTTACAAATTAGGCAAACAGATTGAGGCAGCTAACATACTGTCTGGTGGTGTTGATATATTTGATGACAATGATAATTCATTTGATGGTAGTGAGTTGGTGATAGATGATAATGTGAATACTGATGAAGAAAGACCAGAGGAAAAGAATAAAGACAGTATAGAAGTGGAAGGTGGCGTTGATGTGGAAGAGGCTATCCCAAGCAAAGACACAGAAGTGGTTCTCCAGATTGATGGGAAGAATGTAGATGCTATTGACATTGGAAATGGATTGTATTTGTATCGGCGAGGTGGGGAGCAGGAGGAGTTGGCTGCTGTCCAAATTGTTGATACTGAAGAACAGCCAAGTTTTAAATTTCTTAAAGTCAGagaaAATGCGGAAGGGAATCTTGAAGTATACGAAGAATTTGAAGTTGAAGTACCAAAAGAAATGcCTGCTAAAGGAGTTGAACCAAACAAGAAAATACCCAACGTTCCTGCTAAAGATATGGGTAAAGTTATAAGTAAATCAATAGAAAGTTCGGAAAAGAAATTAGCTCCTCAAACAACGGTAACCAAACCTATtgatattgaaaaaataaatactctgCCAATGAAACCACAAACTGATACTAAAACTGAAGTAAATTTAAATGGGAAAACAATGAAGTTCAATGATGCTAAAAAATCTCCAATTGTCGGCAGTTTTAAACCTATGACATACCACTCTACACCAAACAAAGAAGGTATTCCATTGACAAAAACAATGGTGGATCAGCAATTGCAACCAAGCCGACATTCAGAGAGTGCTAAAAAGAAAATAGAAGTTAATACTGAGAGTTGCAAACAAAAGACTAGTACTGAAGCACCAGTCAAATCTGGTGACGATGAAGGAAAAAGTATGAAAACTGAAGATGtagttgataaaaataaaataaaattgttaactGAGGGACTCGCCTCTGAAGAGAGCAAATTGATTAAAGACATTGAGTGCAAGACAACCGCTGAAGAATCTACAAAATGTGATATCAATTTGGAAAAAAATGAAATAGACAAAACACCAGTTTCCTCTGCTCTTCCATTGAAAACTGTTAAACCAGCTACTGATGTCAATATTTGTGCAGACACTAATGCAACAGCAACAATAACTGTCGAAATACCTACAAAAGTTGATACTAATTTGCAACAAATTGAAATAGACAAAACATCATCTTCCCCTGCtcttctattagaaaatattaaaccAGCTCCTAATATAAACATAACTGCAGACACTAACGCAACGACAACAATAACCGCCAAAGTATCTACAAAAGTTGATACAaatcaaaaaaatcaaaaagaCAAAACTCTATCTTCCACTACTTTTCCATTGGAAGAAGGTGCACCAGCTTGTAATGTCAATATAACTGCAGACACTAATGCAACAGCAACAATTGATATGCAAACTGACATATCTTCTCAAAATACCAATACTGAAATATCAAACGACAAATCGAATTCATTGACTGATCAAACAAGTTCTCCTATTTGTGCTAATGTGCCCGGAACTATTTCAATTGAAGATAAGGTAATTATCAATGCCACAGACACAAATCAGTTAAAAGACATTGCTAAAAAAGGAAATGATAGTGCTGCTGCTCTCGAACAAAAAGAAATAAGCAAAGAAGTACACAGTAGTTCTCAAGTTCTTGATAATGAATCAAAACTATCAAAAAAGGTAGAAGTatcaattaataaaattcaTGATGAACCTGAAAAATCAAAGGTTAATAATGAAACAGATATTAATGAACAAAAGAGTGTCAGTGATTCCATGAGCAAATTGGTCAAAAGTCCTGAAGAAGTGGCTAAAACATCTGAACCTGTTGCTTCAGATTCAACTTTTTTATTAGATACAGAGAAggatttaataaatatagctcACAAAAAACCTGAAACGGCTAATTTGTCAAATGATTctgaaataaaagatgttaatgCTGCTCTAAAGTTCATTGACGATTCAAAGAAAGAAATCTCAAAACCTAATGAGATTCAAATAACTGCACCATCACTTTCAATGcgggaaaatattaaaattattgaagCACCTGCAAAGTCTTCGCTTTATGCTAAACCATTTCAATCAACTGGAGAAAAAGCGCAGACTAAAATTTGTATAAGTCCAAAAGAGAATGATTCATCAACATTAGATCTGATAGAATTAAATGACTTAGGAATAAGTGTCTCAAAAAATACAATTGACAAATCCTTGATGGATAATACTTTCTTTCCTCAGGCAGTTAAACAGTTACCTCAAAAAAGTGTTGGTGCCAATAAATATATCAAACCAGAAACAAAGTCAATTAGTACAGCCTCAATAAAAATAGACAGTAAAACTCACAAGATCAGTACTGATTctaatttttgtaatatgttttataatagCAGCAAAGCAAGTAAGGTAATCGATGATAAAGAATTtgttgaaaatattgtaaataaagcaGTAATCATGAAAAATCCACAGGACACGAATGTGAtaccagaaaaaaatattacagccAAAACATTGTCAAAACCTGCCTTATCTACAATAATTAAACCACCTGAGGCTATAACAGAAATAGGTAAAAGCAATTCGCAACAACCAAGTGAAATCAAGCCGAAACCATTAAATAATAATGCTGTGCCTTTCGGCAAATGGACTGAAGCTAATAAACAagaatatttaaacaaaataaaagaaacaaaggtgACATCAACGAACACAAACCAAATAAAACaaccaaaagatttaaatagACGTGATGTTTTGAAAAAGATTGATAGCCAGCGGCAGTCTATTAATATGGCTGCTGCTAAAAGTCAAGAGTATggaaatagtaataaaaataatatgaaaattgAAACTCCGGCTTTTACGAACAAAGTTTCAGCAAGAGTAGATTCTAAAATACCGTTGATGATAAGTAAAGTAGAATCAAAACCTACCGAATTGAAACAAAAGTCGGCAACCACGCCAACTACTGAACCAGTTTTAAAGGTTGCACCAAAACTAATACATCCAGCTGTTTCAAGTGAAATTACGAAACCAGTTGATGCTAAAATCGCTCAAGTTGAAAATAACACCAAAACTGTGTTACCATCCAAAAAGGCTTTTCCGGACAAAGGTCTTAAATTGAATACGTCTACTAATGTTGAACAAAGTGCCAATCCACCAGTTGCCAAAGTTGAAACAAACCCTATAATAGCACCCAGTACTAGTAGTTCACAAGCATCAACGGTTGAACCCTCAGCTAGCACAGCTAGCCAATCTGAGGAGGCTGAGGCAGCAGCAGCTGCGGCATTAAGCAATATGAATTCTAAACAAGACGTGATCAACAAAGCAATTGAAGATATACTTTTGGAAAGAGTGCCACCTCTAAAAAGGAACCATGGTGGCAGGGCTAAAGACAAGCAAATTGAGAACATAGTATTAAGTTACGAAAAAAAATACTCGTTAATAGAAAAACAAGCTATTCAAGAAATAGAAATGAAAATGAATGAGTTGCACGGCATACCATTTGTCGAGCGACCGCCACATGAATTGCCTACACGGTATCCCCAGGATTTAACAGGATCTAACAAAACTGACAAAAGTCCAAAACCGTCACCAAATAAAGGTAAAGCTTCCAAAGTGCCAAATATAAAATCGCCATCGAAAGAAGAAAAATCTGTGAAATCCAGCAACCTTGATGATTCTGAATCAGATGAAGAATTGATTGAACATGAACCTGTTACAGGTGATATTGATTTCAGTAGAATTGCTTCATCTGTATCTAATACTAAAGGTGAAGCAAACATTGCTCTTCAGCCACAAAAAGACAATGTTGTAACAGAAAAAGATTTTGATAAATTCACGCGACGTACTTCAGCTTATTATGATAACAATAGCACTGTGAACTATGAAAAAAACCAAATCGTGGTAAAGTCCTTGGCTGACAAAAGTAGCAAAATACATGATAAAAAGGAAGTAGCGATCAAATCAAATTTGCTTACACCCCCACCTTTGACAGGTTTACGTCATAGTAGTTCGTCAAAGTTTGTGCCTGTGCGCCCCGAAGACtcttttaataaaaactatCATTCCAAGTTACAAATTGCATACCAGTCAGCAATAACAGCTAAGCAGCACAAAGAATCACCTATCACTGTCATTGAAGATAAACCTGTTAGAGTATTGTACATGGAAACAAATACCGATTATAATCCAACAAATGCTAATATGAAATCTTCCAATATTTCACCGACTAAAAAAGGCAAAGAGACAGAAATACCGACTTATAGTTCTTACGATACTTCATTGGACTCTGAAGTAGTTGAATGCGTAAATAGCAAAACTCAAGAGATCACAAGAAAGGTCAAACATCAAAGGAAGCAAGTCTTGACACCTGTTGAAGCACCTGATCTTGAGGTCATAGAGGCGGGATCAGAAGTTAGTCCCAAGAAAAAACGCAAAACTGATGATTTGACAGTTTGTAAAGAGAAAAGTCCTAAAAATATCTTACCTAAGAAAACATACTTACTTGGTAGAAGTGCTGTTTCCCATGATTCACCAAATGTATCAAAACCTAAAAATATTGCGCCTATGGAAAATTCCACTGCTTCGGCCATTGATAGCCTTGTAAAAGCTGCAGAGTTATTGGAAAATCAAGCTGAAAAAAGTAATTCTACTATGGATTCAGAAAGTAGCCCTCAAACGTCATCAAAAAGAGGAAGAGGTCGTCCTAGAAAATATCCATTACCTGAAGGTGCTGAAGAAAAGAATACCGAAAGTCCTCAAAAAAAGACGCGCATAGAAAAACCAAAGTATATATCAACATCTGAAGAAGACAGCAGCAGTGATGAAATGATTCGGGAAAATTGGACAATGGGTAAAATAAACGAAGATATAGTATGTCCTATTTGCCACAAGTTATTCCGCTCAGAAAATGTGGTGTTCAAACACGTCAAACATTGCACAGGACCATCTCCTAATAGGTCTGATTCCGACAAGCGAAGCACGACTAGAAGTAGAAGATCACAGGAGTCTGACAGTAAGTCTTTTGTTAGCAAGTCAGAAGATTTGGACTATGAAGATGAAGACTCCAGTCATGCTGTTAGTGCTTCAGTTAAAAGAACCCATGTTTCAAGGAAAAGTGAAATTATTGTCATAGAAGATACACCAATCAAAGAGAAAAAGGAGCCTGCAATAACTAAGGAAAATAAAACGGCTACAAAATTGCCCACCCAAAAACCCAAACCTAATAATcttgtttgtgaattttgtggtaagaTTTTCCGTCAACTTTCCTACTTGGTCAGTCACAAATTACAACATAAAAATGAAGAAATAAAAGACAAACCACCTGAAGTGCAAGCAGCTTCCAAATCTATATTCAGTTGCGAGGTGTGTAAAAAAGAGTTTAGAAAACTTCATCACTTAGTGCAACATCGGATAATACACAATCCACCTCGTATGCCACCTAAAATGTCTAGAAAAAGTTCTGTAGAGAACAGTGAAAAGGCTCTTAATTCTGCAAGTTCCAAAGGAACTGAAGATCAAAGCGCTGGATTTAGATGTGAAAGATGTGATAAGTCATTCAGAAAACTGCATCATTTGGTAGAGCATAGAGAAACTCACGAAGGACAAGAAACAACTAAGCAAAAACCGGCTACGACATCATctgaaaatgttgaaaaaccAACAGTATCACCGCCACAATGTGATGTTTGTAAGAAAACGTTTAGAAAGTTGCATCATCTTAGCGAACATAAAGAACAACACGAAATATCTGATAGAGCTAATGAGAGGAAAAATGCTCTGTCAGCCAAAGATATAATTCATGAATGTTCCCTCTGTTATATGGTATTCCCTAATGAACATTCTTTGAACAAACATATGGTGGCTTGTCAAAGAAAAAAAAGGCAATCGGCTGCAACAAAACCCGGTCAAGGGGAACAAGAATCAGAACAAGAGTTAACTGAAGATAAAGAAACCACAGAAGCGCCTGAGCGTAAAAAGAGTGTAGAATCAAGGCTTAAAGTTGATAATTCTGATACGAAATCAATAACTAAAGAAGAATCTCAGAAAATAAACGAAGTAGTAAGTTTAACTATAAAAGAAGACAAATCTActaaaaaagaagaagaaacatTACAAGTTCCCGAAAAAATTCCCGTGTCAAAGACTGAAACTAAACCGGAAACTCAAAATAAAGATACAGATTTAGTTACCATAATTTATCCAACGGAAGAGAGTTTACCCAGCAAAAAGAGTATCGTAGAGGAGGTTAAGGATATAATTGTAATAGAAGATACACCAAAAAAGAAAATTCCGAAAGCAGCTAGCACGGTTACTAAGAAACGAAAATCTTCTAATTCATCAATTCCTAAAGTAGAAGACACTAAACCATTAAGCGACGAAGATGAAATAAGATATATGTTAAATCCTGATTTCAAAGAAGATTCTTCAGAAGGCAAATTCATGAAAATACGCACTAATAAACGTAATTCACTACAAATAGAAAGGCCTAACTCGAAAGAGCTAATCACTAGACGCATATCATTACAACATCTACCGAAGgtaataaaacctaaattaaaacCTGAAACTAAAACGATAACTAATGCTGTGAATACAATTAAACCAATACCTTCTAAGTTACCTAAATTAGATGCAGTGCCTGTACCAAATTCAGATGATACTGAAATAAAGTATTCATTCCCAAAAAGACCTCCAGAGAAAGTCGCACCAAAAGAAGTACCAATAAAAGAAACTGGGAAAATAGTAAGGAAGAAGTCTTTGGGTGAAAAAAGAAAGAGCTTAACTTCTATagcaaaaagaaaaactttagGTAGACCAATTACGCCAAAGAATGTGCCAAGACCTTTATCTAAAGTTTCACCTCTGAGGGAAGTTAAAAAACgaTTAACAGAAACGGGCCATCGATGTGACTGTGGCCAGCTATTCAGTAGTGCAACGTTACTATCTCGACATACAACTTTAGCGCACACTCCACCGCGAATCAGAAAACGACGCTCGCCTCCTCCTGAAACAGCAAAGCCAAAAACAGCACAAAAAAGGAAATTAAGCGTAAAATCTGAAACGAAGCCAGGTGTAAGTTCTCGCAAGTCAAATGTCAAAAGTGATGTAGAAATTAAAACTGCTGAAAAATCACCAAAGAAGAAAGTAAAGACTGAAGTTCCTTCTACGGCCGCTAAACTAAGGCGAAACACGACTCACAAGGGTGTTCCAGTTCCggagaaaatgaaaaaaatcataGATAAGTTGAAGAAGTAA
- Protein Sequence
- MDRLNQLKGEPGASRDSTLDVSSPLSEAYLTANESSSKYFSLSEEDSTFDINPTKDEERPTSDSDQLISNLSPIPKKNDIGYKLGKQIEAANILSGGVDIFDDNDNSFDGSELVIDDNVNTDEERPEEKNKDSIEVEGGVDVEEAIPSKDTEVVLQIDGKNVDAIDIGNGLYLYRRGGEQEELAAVQIVDTEEQPSFKFLKVRENAEGNLEVYEEFEVEVPKEMPAKGVEPNKKIPNVPAKDMGKVISKSIESSEKKLAPQTTVTKPIDIEKINTLPMKPQTDTKTEVNLNGKTMKFNDAKKSPIVGSFKPMTYHSTPNKEGIPLTKTMVDQQLQPSRHSESAKKKIEVNTESCKQKTSTEAPVKSGDDEGKSMKTEDVVDKNKIKLLTEGLASEESKLIKDIECKTTAEESTKCDINLEKNEIDKTPVSSALPLKTVKPATDVNICADTNATATITVEIPTKVDTNLQQIEIDKTSSSPALLLENIKPAPNINITADTNATTTITAKVSTKVDTNQKNQKDKTLSSTTFPLEEGAPACNVNITADTNATATIDMQTDISSQNTNTEISNDKSNSLTDQTSSPICANVPGTISIEDKVIINATDTNQLKDIAKKGNDSAAALEQKEISKEVHSSSQVLDNESKLSKKVEVSINKIHDEPEKSKVNNETDINEQKSVSDSMSKLVKSPEEVAKTSEPVASDSTFLLDTEKDLINIAHKKPETANLSNDSEIKDVNAALKFIDDSKKEISKPNEIQITAPSLSMRENIKIIEAPAKSSLYAKPFQSTGEKAQTKICISPKENDSSTLDLIELNDLGISVSKNTIDKSLMDNTFFPQAVKQLPQKSVGANKYIKPETKSISTASIKIDSKTHKISTDSNFCNMFYNSSKASKVIDDKEFVENIVNKAVIMKNPQDTNVIPEKNITAKTLSKPALSTIIKPPEAITEIGKSNSQQPSEIKPKPLNNNAVPFGKWTEANKQEYLNKIKETKVTSTNTNQIKQPKDLNRRDVLKKIDSQRQSINMAAAKSQEYGNSNKNNMKIETPAFTNKVSARVDSKIPLMISKVESKPTELKQKSATTPTTEPVLKVAPKLIHPAVSSEITKPVDAKIAQVENNTKTVLPSKKAFPDKGLKLNTSTNVEQSANPPVAKVETNPIIAPSTSSSQASTVEPSASTASQSEEAEAAAAAALSNMNSKQDVINKAIEDILLERVPPLKRNHGGRAKDKQIENIVLSYEKKYSLIEKQAIQEIEMKMNELHGIPFVERPPHELPTRYPQDLTGSNKTDKSPKPSPNKGKASKVPNIKSPSKEEKSVKSSNLDDSESDEELIEHEPVTGDIDFSRIASSVSNTKGEANIALQPQKDNVVTEKDFDKFTRRTSAYYDNNSTVNYEKNQIVVKSLADKSSKIHDKKEVAIKSNLLTPPPLTGLRHSSSSKFVPVRPEDSFNKNYHSKLQIAYQSAITAKQHKESPITVIEDKPVRVLYMETNTDYNPTNANMKSSNISPTKKGKETEIPTYSSYDTSLDSEVVECVNSKTQEITRKVKHQRKQVLTPVEAPDLEVIEAGSEVSPKKKRKTDDLTVCKEKSPKNILPKKTYLLGRSAVSHDSPNVSKPKNIAPMENSTASAIDSLVKAAELLENQAEKSNSTMDSESSPQTSSKRGRGRPRKYPLPEGAEEKNTESPQKKTRIEKPKYISTSEEDSSSDEMIRENWTMGKINEDIVCPICHKLFRSENVVFKHVKHCTGPSPNRSDSDKRSTTRSRRSQESDSKSFVSKSEDLDYEDEDSSHAVSASVKRTHVSRKSEIIVIEDTPIKEKKEPAITKENKTATKLPTQKPKPNNLVCEFCGKIFRQLSYLVSHKLQHKNEEIKDKPPEVQAASKSIFSCEVCKKEFRKLHHLVQHRIIHNPPRMPPKMSRKSSVENSEKALNSASSKGTEDQSAGFRCERCDKSFRKLHHLVEHRETHEGQETTKQKPATTSSENVEKPTVSPPQCDVCKKTFRKLHHLSEHKEQHEISDRANERKNALSAKDIIHECSLCYMVFPNEHSLNKHMVACQRKKRQSAATKPGQGEQESEQELTEDKETTEAPERKKSVESRLKVDNSDTKSITKEESQKINEVVSLTIKEDKSTKKEEETLQVPEKIPVSKTETKPETQNKDTDLVTIIYPTEESLPSKKSIVEEVKDIIVIEDTPKKKIPKAASTVTKKRKSSNSSIPKVEDTKPLSDEDEIRYMLNPDFKEDSSEGKFMKIRTNKRNSLQIERPNSKELITRRISLQHLPKVIKPKLKPETKTITNAVNTIKPIPSKLPKLDAVPVPNSDDTEIKYSFPKRPPEKVAPKEVPIKETGKIVRKKSLGEKRKSLTSIAKRKTLGRPITPKNVPRPLSKVSPLREVKKRLTETGHRCDCGQLFSSATLLSRHTTLAHTPPRIRKRRSPPPETAKPKTAQKRKLSVKSETKPGVSSRKSNVKSDVEIKTAEKSPKKKVKTEVPSTAAKLRRNTTHKGVPVPEKMKKIIDKLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -