Bsom039285.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- ZFY
- Assembly
- GCA_963576735.1
- Location
- OY755198.1:5859979-5892948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 3.9e+02 3.1 0.8 2 23 323 344 322 344 0.81 2 12 9.8 1.5e+03 1.3 0.0 1 14 348 361 348 367 0.82 3 12 0.0021 0.31 12.8 1.8 2 21 402 421 402 422 0.92 4 12 0.00048 0.071 14.9 2.0 2 23 436 457 435 457 0.96 5 12 0.011 1.7 10.5 0.8 1 23 462 484 462 484 0.97 6 12 0.093 14 7.7 3.9 1 13 493 505 493 516 0.83 7 12 7.5e-06 0.0011 20.5 0.3 1 23 527 550 527 550 0.94 8 12 3.4e-05 0.005 18.5 0.2 1 23 556 579 556 579 0.96 9 12 0.18 27 6.7 2.1 3 23 602 622 601 622 0.89 10 12 0.00014 0.021 16.5 2.7 1 23 628 650 628 650 0.95 11 12 2.7e-06 0.0004 21.9 0.2 1 23 655 677 655 677 0.97 12 12 0.0033 0.49 12.2 3.5 2 23 684 706 683 706 0.96
Sequence Information
- Coding Sequence
- ATGGATGAGACGAAGcagattaatattttcattgaagGCTTCAATGATAGTGGTATATGCGTTGGCTGTTTAAACTACAATCGCAAAATGTATTACTGCGACGatgtaaagaaatattttaagttattaggCAGTATTgagATTCCAGATGGAATGCTGGTGCGTCTTTGCTGGGAATGCTTGGCAGAAGCTCACAAAGTCCGGACTTTCCAGGATAAGATCATCAAATCATATAATGTACTGCTTGACTACTCTTCAACTCACACTTTCCTAGATTCCCCCCAAGACCTAAGTAAGCATGCCAAGGAAAAGCTCACAATTAAACCACCAGAAACTACCTCTTACATTGATGGTGTAGATGTGGTGGAGATATCCCCACAAGTAaagattgaaattgaaatgttaCCGTTCAAGCTTGATGAGAATATTGAGGAAGATATTGTTGCTAATATTAATGATCttgTTCCGGAATCACCTTTACCTGACATACCAGATCTAGAAGATACCAGCGACATCTTCTGTGATCCGCTGTTCAAAGAAGAAAGTGACAATGATAATGGTGGGAATGCAGAAACAGAACATTTAGTCGAGAATAGTGACAAAGAAGACAGGAGAGAAGAAAAGAAGAGATCTAAGAAGGAGAAAAGTGAAAAGAAATCTTCTTTGCACAGAAAACTGAAAGAAGACCGAAAATCTCATAGAAGACGCTCGAAGGAGGGAAAGCGAGACAAAGAACGTAAAAATGCAAGAGCGACGGCTAAACTTAAGATGTTTCCGCCTGATACGGTCGATATTTGTATTATGACTGAGGAACAAATGTGGCTAGTTCGTCGCCAAGACTCGCTGAACGAAACGTATCTCAAATTACGATACAAATGCGATCTTTGCCTCACGCAGTTTCACAGCGCTAAGGCGAAAGATTTCCATATGTCTTCCAAACATCCCAAGAAATCCACCAAAGAATCAATGTGCGACGTATGCCACACAGAATTCCAATCTAAGACGAGCATACCGGCACATCGCACGCTGCATTTGGAGGCATATCGATGTAGATTGTGCCCGCTTGTAACCACTATGAAGAGTATTATGTTGGCACATGTGCCTATTCATAATATGATGTATGCCTGTAACAAGTGTTCGGCGGAATTCAGCTGCACAAAGAAGATGGCGTATCACAAATTGTACTGCAACAAAGTGCGGCCGCAGTGCGATTGCTGTGGCAAGAGTTTCTTCAACAAGAACAACTTGATACAGCATCTCAAAGGTTTGGCGATGAAAGGTAAACCGAAGAAAAAGCTGAATCTGAAGTGTGAACACTGTGAGAGACTGTTCGATACTAAGGATTCCTTGAGAGTGCATTCAAAAGTCCACGAAAACCTCCTCCACCCGTGCCCGCTATGTGGCAAACTATTTCGCTGGCGAACAAGTGTGGACCGCCATTTGCAAACGCACGCTGACAAGGCCGCGGGGAAAACTTACGTGTGTCAGCATTGTCATAAGGTGTTCACAAATATGGCTTCTCATAAATTTCATATTAAACATGATCACGGATCGCCTGATGGGAAACCTTACtgTGAGTTCCAATGCGACTACTGCGGCAAGAAGTACCGCGGTAAAACTAACCTCATCGACCACATCGACTGGGTGCATCTCATGAAAATCAAGTACCAGTGCTCTATTTGTCAGAAGGCATTCAAGTCAGCGCTAAACATGAACATACATATCAGCAATATTCACGATAAAGGCGACAGAAAAAAGTATTTGAGAAAGAAATACAGCTATCCTTTCAACACCAAGAATTTGTGTGATATATGTGGAAGATCATTTACGTGCAAAGCAGTATTAGAAGACCACAAACACGCTCACAGCGGTGTCGCCTCATTCGCCTGCGAAACCTGCGGACGAATGTTCATGACGCAACGACATCTCAAACAACATGCGTATAGACATTCTGGCAAGACGTATCCTTGTCCGATATGTGGGAGGAGCTTTAATAGTCCATCTAATCGGGATAGACATCGATCTgtACATAAGCACGTTCGCGACGTTAAATGCGAGCACTgcgaaaaatatttcaaatcgaAAGCGGAAAGGAATGTCCATATTAAACACGTTCATCTCAAAAAGCCCTGGCCAAAACGAGTGCGCGCCAACCCTAATGAGTGA
- Protein Sequence
- MDETKQINIFIEGFNDSGICVGCLNYNRKMYYCDDVKKYFKLLGSIEIPDGMLVRLCWECLAEAHKVRTFQDKIIKSYNVLLDYSSTHTFLDSPQDLSKHAKEKLTIKPPETTSYIDGVDVVEISPQVKIEIEMLPFKLDENIEEDIVANINDLVPESPLPDIPDLEDTSDIFCDPLFKEESDNDNGGNAETEHLVENSDKEDRREEKKRSKKEKSEKKSSLHRKLKEDRKSHRRRSKEGKRDKERKNARATAKLKMFPPDTVDICIMTEEQMWLVRRQDSLNETYLKLRYKCDLCLTQFHSAKAKDFHMSSKHPKKSTKESMCDVCHTEFQSKTSIPAHRTLHLEAYRCRLCPLVTTMKSIMLAHVPIHNMMYACNKCSAEFSCTKKMAYHKLYCNKVRPQCDCCGKSFFNKNNLIQHLKGLAMKGKPKKKLNLKCEHCERLFDTKDSLRVHSKVHENLLHPCPLCGKLFRWRTSVDRHLQTHADKAAGKTYVCQHCHKVFTNMASHKFHIKHDHGSPDGKPYCEFQCDYCGKKYRGKTNLIDHIDWVHLMKIKYQCSICQKAFKSALNMNIHISNIHDKGDRKKYLRKKYSYPFNTKNLCDICGRSFTCKAVLEDHKHAHSGVASFACETCGRMFMTQRHLKQHAYRHSGKTYPCPICGRSFNSPSNRDRHRSVHKHVRDVKCEHCEKYFKSKAERNVHIKHVHLKKPWPKRVRANPNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -