Bsom038731.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755198.1:393262-407476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 15 7.5 1.5 2 21 195 214 194 215 0.93 2 11 5.3 7.8e+02 2.1 3.7 3 21 226 244 225 245 0.90 3 11 1e-05 0.0015 20.1 2.2 2 23 255 276 255 276 0.96 4 11 0.43 63 5.6 8.8 1 21 281 301 281 303 0.95 5 11 0.00094 0.14 13.9 0.5 1 21 312 332 312 337 0.95 6 11 0.013 2 10.3 0.3 1 23 344 367 344 367 0.91 7 11 4.8e-05 0.0071 18.0 2.3 1 23 373 396 373 396 0.96 8 11 5.6e-05 0.0082 17.8 1.4 3 23 414 434 412 434 0.94 9 11 8e-06 0.0012 20.5 1.0 1 23 440 462 440 462 0.96 10 11 2.1e-05 0.003 19.2 0.1 1 23 467 490 467 490 0.96 11 11 0.043 6.4 8.7 3.0 2 23 497 519 496 519 0.92
Sequence Information
- Coding Sequence
- ATGGCAGTAATAAATGAAACAATTGAAGGCTTCAATGAGAGTGGAATATGCATGGCTTGCTTAAATTATGGCCGAAAAATGACTCGATGTTCTGATGCTGTAAAATACTTTAAGATACTTTGTAACATTGATGTATCCAAAGGTGTGGATGTCTTGCTATGTTGGCAGTGTCACGCGAACATCCATCATATAGACAAATTCCAGCGACAGATTACCAATTCCTACAGTGTTTTAGCAGACTATGCTAGACTGAACAAGTTCCTCTCAGATCCCGAAGAAGTAAGCAGACATGCTAAAGTGTCTCTCACAACAAGTACTTTGAACCCAACTATCTATGTTGAAAGTGCGGAAACCAGAGAGCCAGAAAGTTGTGTCAAATCAGAAATAGAAGCTGATTTCAAATTTGAAGTAAAACCAGAGACAGACCAAATAAATCCATCACCAccaaatgatgatgatgatgacagaGTTGATGATGAGTCATTTGATGAAGACTTGCCGTTGATGAAGAGGAAAAGTGTGAAATTTAAGAAGAGACCAGCCAAAAGAGAATGTGATAAACGAAGGAGTGAAAGGGCTTTAAGATGTTACTTGTGTCGATGTCAATTTGAAAACGCAGAAGAGTTAAAAGAGCACAGAAAAAACTGCGACGCTTTGAAACGAAACAGTGTGATTTGTGATTGTTGTAACCGCAGTTTCGTTTGTAAGAAAAACTTACTGATGCATTTGAGACAAATGTCAAACAAAACAGAGGAGGAACCGAAATGCAATATTTGCAACCGAACGTTTAGTAACAAGAAAACGTTGATGAGGCACTCCGAAGTCCATGACGGCAAAGAGCACAAATGCCATCTCTGCAACCAAAAGTTCCTTTGGAAGAGCAACTTGAAGCGGCACATGAGATGTCACGAGGACAAGATGGCGGGTAGAAGATATGAATGTAATATCTGTGACAGGAGACTGGGCAGTCTCGCCTCTTTCAAAcgacatattaaatataataagggACACGGGAATGTGGATTATTGTTACAAATGCGAGCAGTGCAacatgtcttttctaaacaaaCAGAAGTTGGCGGACCACGTGGACTGGGACCACTTGAAGATATTCAAGTATAAGTGCCATATTTGTCAGAAGGCGTTCAAAACAGCCCTATCGATGACGAATCACGTGAAATACATCCACGAGGGGTCGGTTAAGAAGAAGTATGGGTACGAGGCGAGCCAACAACATCTCTGTGATATATGCGGGAAGTCTTATAagTTCCAATCCCTCCTAGAGGACCACAAAACGGTGCACAGCGACACGGCGACGTTCCCGTGTAATGTCTGCGGCAAGTTGTTCAAGAAACAGTCGTCGTTGAAGACTCACGCGTACATGCATCGCGGACAGAGCTACGAGTGTGCCGTTTGTGGGAAGGCGTTTAATAATCCCTCGAATAGGGATCGCCATGTTAAATATGTACACAAAGAAGTGCGCGACGTGAAATGTGATTTTTGTGAGAAATGTTTCAAGTCTGAAGCCGACAAAAAACTGCACTCTAAATATGTGCATCTCAAACAGCCGTGGCCCAAACGAGTTCGGGGGGCGGGGAGGGGACACGAATAA
- Protein Sequence
- MAVINETIEGFNESGICMACLNYGRKMTRCSDAVKYFKILCNIDVSKGVDVLLCWQCHANIHHIDKFQRQITNSYSVLADYARLNKFLSDPEEVSRHAKVSLTTSTLNPTIYVESAETREPESCVKSEIEADFKFEVKPETDQINPSPPNDDDDDRVDDESFDEDLPLMKRKSVKFKKRPAKRECDKRRSERALRCYLCRCQFENAEELKEHRKNCDALKRNSVICDCCNRSFVCKKNLLMHLRQMSNKTEEEPKCNICNRTFSNKKTLMRHSEVHDGKEHKCHLCNQKFLWKSNLKRHMRCHEDKMAGRRYECNICDRRLGSLASFKRHIKYNKGHGNVDYCYKCEQCNMSFLNKQKLADHVDWDHLKIFKYKCHICQKAFKTALSMTNHVKYIHEGSVKKKYGYEASQQHLCDICGKSYKFQSLLEDHKTVHSDTATFPCNVCGKLFKKQSSLKTHAYMHRGQSYECAVCGKAFNNPSNRDRHVKYVHKEVRDVKCDFCEKCFKSEADKKLHSKYVHLKQPWPKRVRGAGRGHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -