Bsom019848.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755181.1:17211620-17219476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 2 10.3 2.9 2 23 25 46 24 46 0.94 2 15 0.18 26 6.8 4.3 1 19 54 72 54 77 0.89 3 15 3.8e-05 0.0056 18.3 0.9 1 23 83 106 83 106 0.97 4 15 0.053 7.8 8.4 0.4 1 23 108 131 108 131 0.90 5 15 0.036 5.3 9.0 0.2 1 23 165 187 165 187 0.96 6 15 0.27 40 6.2 1.0 2 20 216 234 215 238 0.87 7 15 0.00097 0.14 13.9 3.1 1 23 244 266 244 266 0.97 8 15 0.0074 1.1 11.1 0.2 1 20 272 291 272 293 0.95 9 15 0.069 10 8.1 0.7 1 23 305 328 305 328 0.92 10 15 0.0013 0.19 13.5 2.0 2 23 334 355 333 355 0.96 11 15 4.5 6.6e+02 2.4 1.9 3 23 361 381 360 381 0.94 12 15 0.31 46 6.0 3.3 1 23 386 408 386 408 0.95 13 15 8.7e-05 0.013 17.2 1.4 1 23 414 436 414 436 0.96 14 15 1.6e-05 0.0023 19.6 0.2 1 23 442 464 442 464 0.98 15 15 1.2e-05 0.0017 19.9 0.2 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- ATGGCACCGTGTCGCTCAACAGCCAACGATCTGAGCGTAAAACTCACTACAATAGACCTCATTGGTGGGATATACTGCACCCATTGTCAGCTTACTTTCAAGAATAAAAAGGATTATGATGAACACTACACAGAGCATGGAAGCCTTGCCAATATTACCTACACTTGTGTAGTCTGCCATAAAGAATTCAACAACTATGCCAGCTTCAGGGGACACTGCTACACAGCCCACATAATAAAAAACAGATTCCAGTGCAAAACATGTAACAAGTTTTTCTCAAAACAAGCAGCACTTATTGAACATGAAGAAACCCAACACAAATTCAAGTGCCGCCCACCTTGCAACAAAGAATTTTTGTCCAAAACTGAACTACAAGTCCATCAAATGATACACAAGGAAAACGGTCCACCCTACCCTTGCCATCTTTGTGAAGACACTATAAACTCAGTAGATGAGTGTGAACAGCATGTGGAAATGCACTCTGTATCATCTTACCCATGCCCTATTTGCGATACAAAATTAAATGCTAAATCAGAAGCAGTGCATCACATCACTCAACATTTTGAAGGTGAAACCCCAGAATACAATTCTGAAGATGAAGAGGAGAAACCTCTTGAAGACAGTGTCATTGCAACAATAGGCATAGAATGCTATCTATGTagtaaaaattacaaaagtaAAAGGGAATTTGATCAGCACTTTGTCAATGAGCATGACTGCGAAATAGTGTATACCTGTCACATGTGTGGGCGGATCTTTGAGTTATACAAACAGCTGAATAGTCATCTCTACTACCATGTGAGGAAGCAAAagtttaaATGTGACAGCTGTGCCCAAACCTTCAATCGCCTGTCCCTCCTGGTACAGCATACAGCACTCTGTGAGGAAACACTGGACACAAGATCCAAACCTTTCATATGCATCCATTGCGACGCCGGCTATGCATCAGAAACTACATTAAAAACACATTTGAGGCTGTTCCATGCTGAGAAAAAATTACACTGCCATCTCTGTGGGGTTTCGTTTAAGAAAGGCAAGGACCTAGCAGCTCACTATCTCACCCACAAAGATGCCCGAATCTGTCGCCATTGCGGCCTTGAACTCAAATCACTGGCTTCATGCGAGAAACATTTAGATGTCCACAGAAAAGTTACTTACACATGCCCCATCTGCAAGAAGAAAAACTGTGAAAAATATTACGCCAACAAACATATTTCCCTTCATTTCCAAAGTGAATTTCACATTTGTAAAATCTGCGGTAAAGTTTACAGTGCTAAATACCGTTTGCTGGCTCACATGAAATTCCACGCAGATGTTAAAACTTTTGAATGTGGGTACTGCGGTAAAGGGTTTGTCGGTCAGCTTAACTATGAACAACATATCAATACTCATATGGGGATAAAGCCTTACCAGTGTCCAGAGTGCCCCAGAGCTTTCACCAGCTACCCAAACTGGTTCAAACACGTTCAAAGAATCCATAGCATCGATCCCAAATCGATAAAGAAAATGGCGCCAAAAAATTTAAAAGCAGCTAAGAATGATAAAAATCATAATAATCCCAATGTTGTTTCTGCTGAAAATAAAAATCCGGCTAAAGTAAATGAGAAGATAAATACTGTCAAACAAATTCCTGATAACATAAACACAGTTGCAGAAAATAAATCTGAGAGTAATTGTATCAAAAATGAACCTGCACCTCAAGTGCAATCAGAATTCGAACTTATTGATGATGTAGATGATGCAAGTACAACCAATATGATACCAGATATAATAGACAGGATTTCAGATGACACATCGACTGACCAATATTACTCTCAAAACCTGAATATAGATATACCATCATCTGTCAACACAGCATCATGTGCAAGTCCCAATATGTTGGAAGAAGCATACAATTACGTGCAGTCTTTGGCAAATGAACAAAATATTGAGCTTGAATGTATTGAACCCAGTGTGCTTGAAAATGTGCCGAATATATTTGAAAGTATCTCAAGTGAGCGGAATGGATACAGCCAATATATAAATGTTGACAATGTGACGGTGACTGATTTATCTTCCCCACAAAATTACTACACACACGAAGTAATGGACACATCGCCACTTTACAGTGAGTATGGTGCAGAAATTAACAACTACCCTACAAATATTTCGTTCAACAATAACTCTGATCCAATGCTTGCTGCCGATATACAGTTCTCTGGACCAACCCAAAATATTATACATGAAGTATCAAATACCCATTTCGAGAATGATATAAATGCCAATCTTAAGTGGGATTATCCCATTATCAAGAAAATATGCACACCATATGATCCGATGGCAGATGTTGGTGGCAGTATATTGTCTGTTATACAAAATGATATTTACTAA
- Protein Sequence
- MAPCRSTANDLSVKLTTIDLIGGIYCTHCQLTFKNKKDYDEHYTEHGSLANITYTCVVCHKEFNNYASFRGHCYTAHIIKNRFQCKTCNKFFSKQAALIEHEETQHKFKCRPPCNKEFLSKTELQVHQMIHKENGPPYPCHLCEDTINSVDECEQHVEMHSVSSYPCPICDTKLNAKSEAVHHITQHFEGETPEYNSEDEEEKPLEDSVIATIGIECYLCSKNYKSKREFDQHFVNEHDCEIVYTCHMCGRIFELYKQLNSHLYYHVRKQKFKCDSCAQTFNRLSLLVQHTALCEETLDTRSKPFICIHCDAGYASETTLKTHLRLFHAEKKLHCHLCGVSFKKGKDLAAHYLTHKDARICRHCGLELKSLASCEKHLDVHRKVTYTCPICKKKNCEKYYANKHISLHFQSEFHICKICGKVYSAKYRLLAHMKFHADVKTFECGYCGKGFVGQLNYEQHINTHMGIKPYQCPECPRAFTSYPNWFKHVQRIHSIDPKSIKKMAPKNLKAAKNDKNHNNPNVVSAENKNPAKVNEKINTVKQIPDNINTVAENKSESNCIKNEPAPQVQSEFELIDDVDDASTTNMIPDIIDRISDDTSTDQYYSQNLNIDIPSSVNTASCASPNMLEEAYNYVQSLANEQNIELECIEPSVLENVPNIFESISSERNGYSQYINVDNVTVTDLSSPQNYYTHEVMDTSPLYSEYGAEINNYPTNISFNNNSDPMLAADIQFSGPTQNIIHEVSNTHFENDINANLKWDYPIIKKICTPYDPMADVGGSILSVIQNDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -