Bsom037102.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755196.1:2323679-2327424[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.1e-05 0.012 17.3 1.6 1 23 182 205 182 205 0.96 2 13 2.4e-05 0.0035 19.0 0.4 2 23 235 257 234 257 0.96 3 13 0.46 68 5.5 5.1 3 23 265 286 263 286 0.93 4 13 7.8 1.1e+03 1.6 0.1 3 14 293 304 291 312 0.75 5 13 0.00044 0.065 15.0 0.7 1 20 320 339 320 342 0.94 6 13 0.0001 0.015 16.9 1.9 3 23 347 368 345 368 0.92 7 13 8e-05 0.012 17.3 2.1 3 23 386 406 385 406 0.97 8 13 0.0019 0.28 13.0 2.8 1 22 412 433 412 436 0.91 9 13 0.039 5.8 8.8 0.2 1 23 448 471 448 471 0.94 10 13 1.7e-06 0.00025 22.6 4.6 1 23 477 499 477 499 0.98 11 13 0.0036 0.53 12.1 1.9 1 23 505 528 505 528 0.96 12 13 0.0011 0.16 13.7 1.4 3 23 537 558 536 558 0.94 13 13 0.037 5.4 8.9 0.1 2 23 564 586 563 586 0.95
Sequence Information
- Coding Sequence
- ATGTCTAATTATATGGAAAATACAGATTTAATGAAATTAGACAAAGTTCGATTAAAAGCGGATAAAGACAGAATCAAAAGTAACCTTAAAAATGTGATTCATTCGTCAAAATTTTGTGCTTTATGCTTGGAAGCCGAAATACAGTGTATGTATCATTTGGATTTTGATGAAAACTATGCAGATATTGATGATACAACGACGGAAACGATGCTTTGCGCTGTATTTGGAGCCAAGACCATCAAAATGTTTGCCAGTGATTACATTTGTGAAACATGTCAGAATGACCTAAAGAAGACTTATGAGTTTCTAACCAAAGTGAAGCATTCGGAACTCATTTTAGACTTCTATCTTAACCAAGCCACAAGTCAAATAGAAGACATTAATAACTTATTAAATACATCAGAAAATACTGACATAGCCAATACTATTATCGTCTTACATGATATTCATATGAAGGAGGAAATACAAGAACCTTTAGTACCACCATCTAAGACTGAGGAAAACCCTTTTGAAGTAGATATTCATTATTTACTAGAAAACACTTACATATGTAATTATtgcagtaaaatatttgaaaagaaattacatttaataaatcatATAAAACTAATTCACGAATATAAGAGAAATTGCTGTCCTGATTGCGATGAAGAAAACTGTGTACATGCAAAATATTTTGGAAACCTCCATAGCAGGTCATTGAAGTGCTCAGAATGTGGATATGAGACTAAAAATAAAAGTCTTTTAATATCACACATTAATAAAGACCATTTACATATCCTGCCACATTTGTGCGATGTATGTGGACAGTCTTTTCCATCTAAACTATCCCATTCTCATCACATGAAAAATTACCACCAAGAAAGAAGCACAGTATGTATTTACTGTGACAGAGAATTCAGAGACCATGCCATTGTCACAGAACATACAAAAGTCTGTCAGAATTTAGTAAGAGAGTTTAAATGTGATGACTGTCCTGCCTCGTTCGATAGTAAAAGCAAATTATCAGATCATACTTGGAGGCATTCGGATTTAGCTTGCAATATATGTTTTAAAGTGTTCAAAAATGATAGCAATTTAATAAGACACAAAATTAACTGTCACAATCCTAGTGGGAACAAAGTTAGACATCCTTTAAAACATTCAGATAATCATTGTTCAGTCTGCCAGAAGAAATTTCCTAATAAAGCGGCTTTAAACCACCATATAGAGATACATAGGCCGGGTGAAAAGCACAAATGTTTGGTATGCAATAAACAATTTGATACAAGAAAGGCTTACAAAGCTCATACAAGGGCATATACTCATTTGAGGCGAGAAGACCCAAACATAAAATTTGGTTTTCAATGCACatattgtgattactccggtcctGCAGCAACATTTTTAGAAAATCATGTAAATCTATATCATTTGAAGATAAAACCTTATGTTTGTAATTTATGTAGTAAAACATTTACAACTGCAACGCATTTGAAACATCATATAGAGACTCATGAAGGGATCAGAAAGTACCAATGCTCTGAATGCAGTATGATGCTCTGCTCTTTATCAGGGTTAAAGAAACATTTTCTTCGAGCCCATGCTGATTCAGAGAAACCAGTGGCTTgtgaattttgtaataaatgctTTGTGAATCAAAGCGAAAAGAATAACCATGTAATAATATATCATTCAGAAAAATCCCTTCCTTGTCCCTTATGTGGGTCTTTATTTTCTACCCGGGCTAGTGCAAGGGGGCATGTTAGAAAAGTTCATACTAAAGGTATGAAATGGAGTGAATTTTTGAAGCTGAATTCATATAATTCTAATTTAATGGACTTGGTTCGTGATCGTAGAAAACCATTTGTTTTAAGTTAA
- Protein Sequence
- MSNYMENTDLMKLDKVRLKADKDRIKSNLKNVIHSSKFCALCLEAEIQCMYHLDFDENYADIDDTTTETMLCAVFGAKTIKMFASDYICETCQNDLKKTYEFLTKVKHSELILDFYLNQATSQIEDINNLLNTSENTDIANTIIVLHDIHMKEEIQEPLVPPSKTEENPFEVDIHYLLENTYICNYCSKIFEKKLHLINHIKLIHEYKRNCCPDCDEENCVHAKYFGNLHSRSLKCSECGYETKNKSLLISHINKDHLHILPHLCDVCGQSFPSKLSHSHHMKNYHQERSTVCIYCDREFRDHAIVTEHTKVCQNLVREFKCDDCPASFDSKSKLSDHTWRHSDLACNICFKVFKNDSNLIRHKINCHNPSGNKVRHPLKHSDNHCSVCQKKFPNKAALNHHIEIHRPGEKHKCLVCNKQFDTRKAYKAHTRAYTHLRREDPNIKFGFQCTYCDYSGPAATFLENHVNLYHLKIKPYVCNLCSKTFTTATHLKHHIETHEGIRKYQCSECSMMLCSLSGLKKHFLRAHADSEKPVACEFCNKCFVNQSEKNNHVIIYHSEKSLPCPLCGSLFSTRASARGHVRKVHTKGMKWSEFLKLNSYNSNLMDLVRDRRKPFVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -