Bsom028540.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755188.1:10667677-10670723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 22 7.0 0.1 2 19 251 268 250 270 0.87 2 12 0.00094 0.14 13.9 3.7 1 23 287 309 287 309 0.96 3 12 7e-05 0.01 17.5 2.5 1 23 314 336 314 336 0.98 4 12 0.00065 0.095 14.5 1.7 1 23 340 363 340 363 0.97 5 12 0.00023 0.034 15.9 0.4 1 23 366 388 366 388 0.97 6 12 9.6e-05 0.014 17.1 1.1 2 23 461 482 460 482 0.96 7 12 0.61 90 5.1 2.3 2 23 502 524 501 524 0.91 8 12 0.00048 0.07 14.9 6.0 1 23 530 552 530 552 0.97 9 12 1.2e-05 0.0017 19.9 0.5 1 23 557 579 557 579 0.98 10 12 1.7e-05 0.0025 19.4 0.6 3 23 587 608 585 608 0.96 11 12 0.2 30 6.6 2.1 1 19 616 634 616 635 0.96 12 12 0.5 73 5.4 4.6 3 20 648 665 647 669 0.88
Sequence Information
- Coding Sequence
- atggaTAAAGATCAAACTATTATGCGAACTGATGGACAGTATCCAGTACTTTTGATGCCTAAACGCTGTATGAGTTTAGAAGTGGAATATGATGATTCcactaatatttatacaaaCTTAAACATCTCATCAGTAGACACAggaggaaataattttgatatttattctGGCTGGTGCAATATGAAGCTCGTAGATAGTTACAATGTCAATTTTCAACCCTCACAACTTACTGTATGTGGATTTAACATGTCAAATTGTGACGAAATTACATGTCGTACATCACAAACTTGGATGAATACTGAACCAGCTcaagaaaattttattgataGTACAAGTATAGTTTACAAATCACATACATATGTAAGTACAGAACTGACAAGCACATACAAGCATAAAAAATTTCAGAATTCTTATAGAAATCAGCAACTCCGTAGCTATGACCACAGTGATGAGTTAGAATGTGGTATCATTTTGTCTAAACTTCATGACAATATATTGAATGAGAACATAATAAGAGAGAGGGATGAAAGGAGATTTGTTGAAACTTATAGCCAAGGTGATGCTCTGCAGCAATTGATGTCTGGTGATATTCAGTCAGTATCAAAACGGAACAAGTTAGTACTTTACGTGGGCCCTAACGATGGTAATGATGGAATCACAAATAAAAATTCAGGTCCTGTTCTGACCAGCGTTGGGCAtgatataaataacaaaacatatgGAACCTGTAATCAAAATACTGAGCCAATCAAATGCACTAATTGTGATGAGATTTTTACTGACCCCTTATTCTATGAGGAACATTCGGCAAACTCAATTTGCTGGACACAACCTACTACTACAATAAATACTACTTGCTTCATTTGCCATGAATGTGGGAAAACACTGAAAACCTTTGAAAAACTGAAGCAACACTCTCAATATCATGGCAACCCTGATCATGAATGTAGCCTCTGCAAGAAAGTACTTGCAACGAAATTTTCTCTAAAACAACACATGAAGATACACAACAGGAACTTCAAGTGCAGTAGTTGTCTAAAAATGTTTTTCCAGAAACAAGAACTGGCGACTCATATGTCATCAttgcataaaatatttatctgtACTGACTGTGACTATACAACTATAAATTATGATGATTTTCGAGTGCACATCTCTTCTCATTCTGAGGCCAATGAATTATATGCTGATGAACAGTTGCCAGTTGAGAATGAAGGTATAATTGAAGAAGAATCTGACTTAATTTTGCCACCAACAGATGTTAGTGAGCCAAATGAAAAAGGGGTAGATGAAAGTAAAGGTTTGATTGAGAAGGTTATATccaacaatgtattttttatgagcACAAAGCAAGCAAAGGAGCATTCTCAGGAAAGTAAGAAATGTCACGTTTGCTGGAAAATGTTCAAACGCATAGGTGAGTTGAAAATACATCTTATTGAGCACGTTGTCACGTGCACCATGTTGCAATCGCCAGTATCACCAAACGGAGAACTAGAGCTACGGTGCCAGGTCTGTCAGAAAGAGTGCTTCAACAAAGTTGACAAATACAAAGCACATTTACGAGCTCATGCTAAACTAACTATATATCAATGTATTATTTGCGATAAATACTTCAGCAATTCCAGTAATTATTGCAAACATAAAAAGAAGCACGGCTTATCGAGCTACGTCTGCGATATATGCGGACGCAAGTTCAATACTAAACGGAGCATCATTTCACATATGATTTATCACATGAAAAATAAACCGGTCAACTGTAATCTTTGTTCTCAAATATTCTACTACCCCTCGGAATTAAAGAGACATATGAGGTATTCTCACACAAAGATATTAGGCAATTCGTTTCGTTGCAAATTTTGTAAAGAACATTTCATGTCCTTAAAGAAACTGTGGGATCATGAATGGTCCAAGCACAACGCTAGGAAGTCGGTAGTTGATTGTTTGGTTTGCGATAGCAAGTTTCGGAAATACTCGGAGTTGAGGAAACATTGTTGTGTGGTACATGGCTTTAATATACCTAAGTTGTAG
- Protein Sequence
- MDKDQTIMRTDGQYPVLLMPKRCMSLEVEYDDSTNIYTNLNISSVDTGGNNFDIYSGWCNMKLVDSYNVNFQPSQLTVCGFNMSNCDEITCRTSQTWMNTEPAQENFIDSTSIVYKSHTYVSTELTSTYKHKKFQNSYRNQQLRSYDHSDELECGIILSKLHDNILNENIIRERDERRFVETYSQGDALQQLMSGDIQSVSKRNKLVLYVGPNDGNDGITNKNSGPVLTSVGHDINNKTYGTCNQNTEPIKCTNCDEIFTDPLFYEEHSANSICWTQPTTTINTTCFICHECGKTLKTFEKLKQHSQYHGNPDHECSLCKKVLATKFSLKQHMKIHNRNFKCSSCLKMFFQKQELATHMSSLHKIFICTDCDYTTINYDDFRVHISSHSEANELYADEQLPVENEGIIEEESDLILPPTDVSEPNEKGVDESKGLIEKVISNNVFFMSTKQAKEHSQESKKCHVCWKMFKRIGELKIHLIEHVVTCTMLQSPVSPNGELELRCQVCQKECFNKVDKYKAHLRAHAKLTIYQCIICDKYFSNSSNYCKHKKKHGLSSYVCDICGRKFNTKRSIISHMIYHMKNKPVNCNLCSQIFYYPSELKRHMRYSHTKILGNSFRCKFCKEHFMSLKKLWDHEWSKHNARKSVVDCLVCDSKFRKYSELRKHCCVVHGFNIPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -