Basic Information

Insect: Bedellia somnulentella
Gene Symbol: -
Assembly: GCA_963576735.1
Location: OY755174.1:10648826-10662124[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.071 10 8.0 3.8 2 19 185 202 184 207 0.90

2 12 0.13 19 7.2 0.6 5 23 216 234 214 234 0.96

3 12 0.0026 0.39 12.5 3.9 1 23 261 284 261 284 0.97

4 12 1.5 2.2e+02 3.9 0.3 6 23 294 311 285 311 0.90

5 12 1.3 1.9e+02 4.0 3.8 1 23 317 339 317 339 0.95

6 12 1.9e-07 2.8e-05 25.6 2.4 1 23 353 375 353 375 0.99

7 12 0.00013 0.019 16.6 2.2 1 23 384 407 384 407 0.97

8 12 0.00032 0.047 15.4 0.4 1 23 413 435 413 435 0.97

9 12 2e-06 0.00029 22.4 3.8 1 23 441 463 441 463 0.98

10 12 0.00011 0.017 16.8 1.2 1 23 468 490 468 490 0.98

11 12 1.9e-06 0.00028 22.4 3.0 1 23 496 518 496 518 0.97

12 12 0.00036 0.053 15.3 0.9 2 23 525 547 524 547 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.071	10	8.0	3.8	2	19	185	202	184	207	0.90
2	12	0.13	19	7.2	0.6	5	23	216	234	214	234	0.96
3	12	0.0026	0.39	12.5	3.9	1	23	261	284	261	284	0.97
4	12	1.5	2.2e+02	3.9	0.3	6	23	294	311	285	311	0.90
5	12	1.3	1.9e+02	4.0	3.8	1	23	317	339	317	339	0.95
6	12	1.9e-07	2.8e-05	25.6	2.4	1	23	353	375	353	375	0.99
7	12	0.00013	0.019	16.6	2.2	1	23	384	407	384	407	0.97
8	12	0.00032	0.047	15.4	0.4	1	23	413	435	413	435	0.97
9	12	2e-06	0.00029	22.4	3.8	1	23	441	463	441	463	0.98
10	12	0.00011	0.017	16.8	1.2	1	23	468	490	468	490	0.98
11	12	1.9e-06	0.00028	22.4	3.0	1	23	496	518	496	518	0.97
12	12	0.00036	0.053	15.3	0.9	2	23	525	547	524	547	0.95

Sequence Information

Coding Sequence: atggaTTTGAAGAATGTTTGCAGACTTTGTGCAACAGGATTGGCTACCAAAGATTTATTGGAACTCAGTAACAAAACTCTGCTAAGTTTTGTCCAAGAAATATTGCGTATTGACgTTAATGAAAATGACCATTACAGTACCAAATACTGTTCTAAATGTGAAGATACAATAATTGCATTTCAGTTGTTTATTTTGGATTGTAACCGAGCACAGAAGACTTTAAAAGAATTGTACCTGAAACAGCCATTTGCTGAAGTACAGGTTAAACAAGAGGAACAAGATGTTGTTTATGTTATTCCAAAACAAGAggatGTTAAAAATGAACTAGCAGCCCAAGATTTTGTTAATGCGATTGAAGGAATAGAAACTAATAGTTTCTCTGAAGTAGAACCcctaaataattttgaaaatgccatagatgatgatgatgacatctTCAATGATATATCATTGGCTCAACTTAAAACCTTGAAGAAGCAAGCAGTAGATGACACAATACTATTAAATCCCAAAGAGTGTAGAGGTTTGACGTTAAATGATTTTTGTGAAATGAAATGTCACATCTGCAATGAGAAATTAAAGAATTGGTTTGAACTCAATGACCACTGCAAAGGCTTTCACAATGCTGTTCCAATTGTGAAGTGTCTATGTGGCTACACTAGCTCGAGGAGAGAAGTGCTCTATCAGCATATCAGCACCCACCAATACAATGACGATTTAAGTAATGAGAAAACTGATGCTATTCTTAAGAATGATCTTAAGCCAACTGATTTGTTTGATTTTAGATGTTTCATGTGTGAGAAGGTGTTTCATAGATACACCAAGTTAGAGACACATGCGAAGAGAGTCCACAAATGTGCAGCTAAAGTGACTTGTTCCTGCGGGCAGGTTATTAAGTCAAGAGCTGCTTTGTATAAGCATGTTTCTGATCATAGAAATCCAGAAATATATAGATGTGAAATATGTCAAAAACTGACAAAAACATTCCAAGCTCACCAGAAGCATGTCCAAAAACATGTGCAGTCCAAAGTGCAGGTGTGCAAGACGACCGGGCTCTTCAAATGTGATACCTGTGACAAAACGTTCAAACAAAAAGAGCTATTGAAATCGCACGTTAGGATGCACATACCTATCGAAGATAGAAAAACGTTTGAATGTGACGTCTGCAATTTTAAATTCACGACGCGCTCGTCAATGCTAACCCACAAACGCGTGCGCCACGAGAAATACAAGGGGTTCGTGTGCGACCTGTGCGGGTTCTCGTGCGGGACCAGCGGGGAGCTGCGCCAGCACCGCGCCATACACAGCGAGGATAAGCCCTTCTCGTGCCCTAAGTGTGCTAAAACTTTCAAGACCCACTCGAACCTGAAAACGCACCTGGACACGCACGCGGACACTTCGTACCAATGTTACATTTGCCAGCGAGTGCTCAACAGCCGCCGCACCCTGCGCAAACACCTGCTCGTGCACCAGACCGACTGCCACCACGTGTGCTCCTACTGCAACAAGGCGTTCAAACGACGCCAGACGTTGAAGGTTCACATGTCGATCCACACGGGCGACAAACCAATAAGTTGCAAGTGGTGCAGTGAGAAGTTCTCGTACGCGTCCACGCTGCGGCTGCACCGGCTGCGGTACCACGCCGACAAGATGGCCGCGCCCACCGGACAGGACTGCCAGAGTTATGAGGCACCACTGACTGAGAGAACTTTTGTAAATATCGATCTCGTGGTGTCCTCTACAGCGGCCAGTGACCTTCGCCAAATCGTTGGTCTTTTTTTTAGTGACGCTACTCACACTGCGTTACCTGAACGTGGCAGCCACTCTAAAAACTTCGAACCTTAA
Protein Sequence: MDLKNVCRLCATGLATKDLLELSNKTLLSFVQEILRIDVNENDHYSTKYCSKCEDTIIAFQLFILDCNRAQKTLKELYLKQPFAEVQVKQEEQDVVYVIPKQEDVKNELAAQDFVNAIEGIETNSFSEVEPLNNFENAIDDDDDIFNDISLAQLKTLKKQAVDDTILLNPKECRGLTLNDFCEMKCHICNEKLKNWFELNDHCKGFHNAVPIVKCLCGYTSSRREVLYQHISTHQYNDDLSNEKTDAILKNDLKPTDLFDFRCFMCEKVFHRYTKLETHAKRVHKCAAKVTCSCGQVIKSRAALYKHVSDHRNPEIYRCEICQKLTKTFQAHQKHVQKHVQSKVQVCKTTGLFKCDTCDKTFKQKELLKSHVRMHIPIEDRKTFECDVCNFKFTTRSSMLTHKRVRHEKYKGFVCDLCGFSCGTSGELRQHRAIHSEDKPFSCPKCAKTFKTHSNLKTHLDTHADTSYQCYICQRVLNSRRTLRKHLLVHQTDCHHVCSYCNKAFKRRQTLKVHMSIHTGDKPISCKWCSEKFSYASTLRLHRLRYHADKMAAPTGQDCQSYEAPLTERTFVNIDLVVSSTAASDLRQIVGLFFSDATHTALPERGSHSKNFEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -