Bsom039307.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755198.1:6119238-6140154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.39 57 5.7 0.7 1 19 377 395 377 395 0.95 2 13 0.34 50 5.9 0.6 3 23 408 428 407 428 0.95 3 13 0.43 63 5.6 0.6 2 23 433 454 432 454 0.95 4 13 3.5 5.2e+02 2.7 0.0 5 19 466 480 465 483 0.90 5 13 0.0011 0.16 13.8 1.6 1 23 494 517 494 517 0.92 6 13 1.3e-06 0.00019 22.9 2.8 1 23 526 548 526 548 0.98 7 13 0.068 10 8.1 3.1 1 21 557 577 557 582 0.93 8 13 3.9e-05 0.0058 18.3 3.7 1 23 588 611 588 611 0.96 9 13 0.00015 0.022 16.5 0.7 2 23 619 641 618 641 0.96 10 13 9.6e-05 0.014 17.1 0.4 3 23 660 680 659 680 0.99 11 13 0.00017 0.025 16.3 4.7 1 23 686 708 686 708 0.99 12 13 0.0014 0.21 13.4 1.1 2 23 716 738 716 738 0.97 13 13 1.7e-05 0.0025 19.4 2.5 2 23 744 766 743 766 0.94
Sequence Information
- Coding Sequence
- ATGAGCAAAGCATACGATAGGGTTCTTCACAATATTCTTCTGGACAAGCTATCAGGGATAGGCGTTAGAGGTACTCCACTCGCTTGGTTCGAGTCATTCCTTACCAACAGATCACAATATGTCGAAATTGAAAATTATGACCAAGCAACTGGCAGGTTATGTATGGTAAAATCTGAAACAGCAAAACTAACAAGTTCTATTCCACAAGGCTCCAACATAAGCTGTAtcctgtttttaatttatattaatgacctcccaAAAATAATAGATACCCCATGTTCACTTTTTGCAGACGACACATCGCTGGTGATCCCCTGCAAAAACTTGACAAACCTTACTCGCACTCTAGACCAAACATTCGACAACATTTTATCATGGCTACACGACCACAACCTAGACATCAACTTTACAAAGACTAAATTAATGCAGTTCCGACCCTATCAAAAAACACCTTTAaatattaactacacatataaaaACAATGAGATCAAAACCGTAGACACTTTTTCGCTACTAGGAATCAATATAGACAGTCATCTAAACTGGAAAAGTCATATAAACAGCACAGCTTCAAAACTTTCCAGTTTTTCCTATGCTCTCTTAGAACTGAAAAAAACCACCGACTTAAAAGCTTCCCTTAGCGCATACTATGCTTATGCACACTCTAGGTTACAGTATGGGATAGTGCTCTGGGGTAACAGTACGGACTTCAAACTAGAAAAAGATTCACCGGCCTTCGAAATAAAACCCGAATTGGAATACGATGAGTTAATATCCATCAGTAAAATACCAATCAGTGAGGATAATGATGATGACAGAGACGAACCGTTCCCTCACACTGACACTGATGAGGATTCGATTTCCAGTAATGAGGATATGGGTTCTGAGGGTAGTTTTGAAAAATCTGATGATGAAGTGCTAGTTGATAAGAAAAAACGGTTGGCTAAAGTGAATTGCACAGAAGATGTTGTAAAGGATAGTGATAAAAGTGGTAGTAGTGAAGCGAAATTGAAATCCCTAACCCGTAATTTCAACCCCGACGCCGTCCAAGCGATACAAGCTTCCAAAGAAGAGATAGTACAAATAAGGCAGAGTGATGTTCAAGATCCGTTATTTCTGGCATCTCCCCACAGATGTGTTAAATGTTTTGCTGTTTTTAACACGCCTGGAAAGTTGTTGTATCACGATGTGTCGAGGCATGTTGCTCGCCAATACGCCCCATGTGACATATGCCATCTCCAAATGCCGTCGCGTGCGAGTCTGAAGACTCATACAGATTCGCACTCGCACTATCTCAGGTGTGCGAGTTGCGAGTACAAGACTACGTTGAGTGATCTCATGAAGGCACATCTTAAACAGCATCCGTTTGCGTTGGCTAAACTTCCCGTGAGGAATGTTTGTAAGGCGAATTTTGGATCTAAAGAAGAACTTAAAGAACATTCGCAGCAGTGCAAAGAGGAGCATGTGAGACGAGAAGATTTCGAGTGTGAAATATGTCACAGAATATTTCACTCGGGCTACGGACTGAAAAAGCATATGGTAGCAATGCACTCAGAACACTCAGACACACAGAAATATACATGCCAGCATTGTGGAAAAAGTACAAAATACCGCGCAAATTTACAACGCCATCTACTCATACATAAGGACAAAGAACAAAACAACGTATTTGAATGTGTCGAGTGTGATTTGAGGACGTTCAGCAGACAACATTACCAGCACCATATGAAGTGGGGGCGGCGACATCGCGATGGGAACCAATTCCAATGCGACCACTGCGGCAAAAAGTTCCAAAAGAAGACAGGTCTCAAAAGTCATATAGACCGGCAGCATCTTAATAAGTTTCTCTACAAGTCTTGTCCGGTTTGCGAAAAGCTATTCCCAAGAGAGTCAGCTCTAAACCATCATCTAGAAACGAAGCACTGCGTCACCACCAACAAGGAATTACTACCCGGAGCCACTAATAAGAGTATACTATGTGATATATGCGGGAAGGCTATAAGGAGCCGCGGCCTCCTCCGGCGACACAAGCAGACGCACCTCAGCTACCGCAGTTTCCAATGCGACGTCTGTCACAAGATGTTCAAGACAGAGCTCACACTGTACACGCACAAGAGAACTCACGAGGAGAAAACGGACAAGAATCGGTGCAGGATCTGCGGGAAAATGTTTCTGCATATTGGGAATATGGTGAAGCATATACGGACAGTACACGCAGAGAGAACGATTCCGTGCGAGCATTGCGGCAAAATGTTCAAAAGCACATACGAGCTTAAAGCGCACACGAAACATGTGCACTTAAAAGAGCCGTGGCCGAAAAGAGTTAGGAATAAAAAACCGGGAGATAGAATGATCGAAAAtaattga
- Protein Sequence
- MSKAYDRVLHNILLDKLSGIGVRGTPLAWFESFLTNRSQYVEIENYDQATGRLCMVKSETAKLTSSIPQGSNISCILFLIYINDLPKIIDTPCSLFADDTSLVIPCKNLTNLTRTLDQTFDNILSWLHDHNLDINFTKTKLMQFRPYQKTPLNINYTYKNNEIKTVDTFSLLGINIDSHLNWKSHINSTASKLSSFSYALLELKKTTDLKASLSAYYAYAHSRLQYGIVLWGNSTDFKLEKDSPAFEIKPELEYDELISISKIPISEDNDDDRDEPFPHTDTDEDSISSNEDMGSEGSFEKSDDEVLVDKKKRLAKVNCTEDVVKDSDKSGSSEAKLKSLTRNFNPDAVQAIQASKEEIVQIRQSDVQDPLFLASPHRCVKCFAVFNTPGKLLYHDVSRHVARQYAPCDICHLQMPSRASLKTHTDSHSHYLRCASCEYKTTLSDLMKAHLKQHPFALAKLPVRNVCKANFGSKEELKEHSQQCKEEHVRREDFECEICHRIFHSGYGLKKHMVAMHSEHSDTQKYTCQHCGKSTKYRANLQRHLLIHKDKEQNNVFECVECDLRTFSRQHYQHHMKWGRRHRDGNQFQCDHCGKKFQKKTGLKSHIDRQHLNKFLYKSCPVCEKLFPRESALNHHLETKHCVTTNKELLPGATNKSILCDICGKAIRSRGLLRRHKQTHLSYRSFQCDVCHKMFKTELTLYTHKRTHEEKTDKNRCRICGKMFLHIGNMVKHIRTVHAERTIPCEHCGKMFKSTYELKAHTKHVHLKEPWPKRVRNKKPGDRMIENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -