Bsom036177.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755195.1:6838291-6845386[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0086 1.3 10.9 0.4 2 19 249 266 248 268 0.94 2 10 0.079 12 7.9 0.1 3 23 294 315 292 315 0.95 3 10 0.0025 0.37 12.6 0.3 1 23 336 358 336 358 0.97 4 10 0.0053 0.78 11.6 0.1 1 23 362 384 362 384 0.97 5 10 4.5e-05 0.0066 18.1 0.1 1 23 391 414 391 414 0.96 6 10 0.082 12 7.8 1.0 3 23 422 443 420 443 0.93 7 10 5.5e-06 0.00081 21.0 0.5 1 23 449 472 449 472 0.98 8 10 0.00024 0.035 15.8 0.1 2 23 478 499 477 499 0.95 9 10 9.1e-05 0.013 17.1 8.3 1 23 505 527 505 527 0.98 10 10 1.1e-06 0.00016 23.1 2.5 1 23 533 555 533 555 0.99
Sequence Information
- Coding Sequence
- ATGCAAGTAAACACTAAACAGGGTCCTACTTACGACCCAGGAATTTGTAGATGTTGTGGTTTTATGAACAAGTGCCGGATATTATCTGAGGAATATGAACATAATGGACGCAAAGAAGTATACTCTGATATGTTTATGGACTGCTTTGGGTTATTGTTATCAAACATGGATGGAGAAGTGACAGATCGGTTGGTCTGTGCCAAGTGTGTGTGGAAGTTACGGGAAGCTAATGAATTTCGGAAACAAGTACTTAAATGTGAAGAGGTTTTTCTGCAGAGACTGCATGAAGATCAAAAAGATTTCAAAGTGGAAATAAAAATCGAGAATGATTTATCACAAAACGATGACACTGAAATATATGACGGTAGTAACCCTAGTTCTTCGAGACCTACCTCGCCGTTGGATAAtgAAAATTGTTCAGACGCTACAGATGAAAGTGACTTGAAACCATTAAAGAGAAAGCAGAACAAATCTCCCAAAAAGCAGTCTAAAGATAAATCACAAAGTCCCACAAAGGGCACAGACGCGAGAGACAAACTAAGACACAAGTTATTGTATGAAACGCAAAAATTGAAAGCCTTACTTAAAGAAACTCAAATGAGGAAAAGATATACTCCGTATAAACCTCCTAATAGTGGAAATGCTCCTCGCCAATTGCACGAAGAAAAAATGAGATATTTCAACCTCCTAGCTTTAATAGAATGCTCTTACATATTCCCTTTCAAAAACCGTATAAGCAATTTGTACTGTTACTATTGCAAACAAATATTTACCGATACCAATGAGTTAAGAAATCACACTTGGGGCCACAACCCTAAATTGTTCCAAAGAACAATGGAACCGAAACGCAGTGTGAAAGTGGACATAACTAGAATCGATTGTCGATTATGTCCCGAATCGATAACCGATATCGATACATTCAAAAATCATTTAACGACCgtacacaaaaagaaaatatatcccGTAAACAAAGAATGTATAATGTTTAAGTTATCAATGGACGAGTACAAATGTTTAGAATGCTCCGAAAGATTTCCGTTTATAGACAAACTTATAGATCATATGACAGAACATTATGGTACTTACATTTGCGATAAGTGTGCGGCAACTTTTATAGACGAAATTTCTTTAAAATCCCATTATTTAAACCATAGTAAAGTCGTGCAAAATTTCCCTTGCGATATTTGCGGAAAGAATCTTAAATCTAACTGGAGCTTGCAATTACATATATCTTCTATACACGAGAAAAAGGCAATGGTACATTGCTTTAAATGCGAGGCCACTTTCATAACATACGCTCAAAGAACCCGCCATCTTATAAACGTGCATGGTGATAAAAGATCTTATCCGTGCACGAAATGTGAGAAAGTTTTCGATGTGAGAAAAACTTTGATGGAGCATATGAGAAAGGCTCATATGCCTGCGAAGGATATGTGTGAAATTTGTGATCGTAGGTTCGATTCTGCGCCGAGTCTAAAAGACCATAAATCGGTTCATACAGGGGAAAGGAATTATCATTGTGAATACTGTGATAAATGTTATCACAGACGAAAGTCGTTGATAGAACATATAAGGACGCACACAAATGAGGGTAGATATAAGTGTGATCAATGCAATAGTACGTTTTCGCAGAATGTGTCCCTCAAAAATCATATGAAAACACATAGCGATGGTTTTGAGATGACTAACAGCTTttttaatgtataa
- Protein Sequence
- MQVNTKQGPTYDPGICRCCGFMNKCRILSEEYEHNGRKEVYSDMFMDCFGLLLSNMDGEVTDRLVCAKCVWKLREANEFRKQVLKCEEVFLQRLHEDQKDFKVEIKIENDLSQNDDTEIYDGSNPSSSRPTSPLDNENCSDATDESDLKPLKRKQNKSPKKQSKDKSQSPTKGTDARDKLRHKLLYETQKLKALLKETQMRKRYTPYKPPNSGNAPRQLHEEKMRYFNLLALIECSYIFPFKNRISNLYCYYCKQIFTDTNELRNHTWGHNPKLFQRTMEPKRSVKVDITRIDCRLCPESITDIDTFKNHLTTVHKKKIYPVNKECIMFKLSMDEYKCLECSERFPFIDKLIDHMTEHYGTYICDKCAATFIDEISLKSHYLNHSKVVQNFPCDICGKNLKSNWSLQLHISSIHEKKAMVHCFKCEATFITYAQRTRHLINVHGDKRSYPCTKCEKVFDVRKTLMEHMRKAHMPAKDMCEICDRRFDSAPSLKDHKSVHTGERNYHCEYCDKCYHRRKSLIEHIRTHTNEGRYKCDQCNSTFSQNVSLKNHMKTHSDGFEMTNSFFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -