Bsom019828.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- znf711
- Assembly
- GCA_963576735.1
- Location
- OY755181.1:16868919-16875651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 4.2e+02 3.0 0.3 2 23 6 27 5 27 0.95 2 13 0.16 24 6.9 0.0 1 20 990 1009 990 1011 0.95 3 13 1.5e-05 0.0021 19.6 1.7 2 23 1114 1135 1113 1135 0.97 4 13 0.00023 0.033 15.9 1.5 1 23 1141 1163 1141 1163 0.98 5 13 0.00044 0.065 15.0 3.2 2 23 1170 1191 1169 1192 0.95 6 13 0.071 11 8.0 0.6 6 23 1206 1223 1202 1223 0.97 7 13 0.017 2.5 10.0 2.5 3 23 1230 1251 1229 1251 0.97 8 13 0.00027 0.04 15.6 0.4 2 23 1268 1288 1267 1288 0.97 9 13 0.00023 0.034 15.9 0.3 1 20 1294 1313 1294 1316 0.89 10 13 0.00036 0.053 15.3 0.2 1 23 1324 1346 1324 1346 0.98 11 13 0.0039 0.58 12.0 7.1 1 23 1352 1374 1352 1374 0.98 12 13 3e-05 0.0045 18.6 1.4 1 23 1380 1404 1380 1404 0.97 13 13 0.00028 0.041 15.6 5.1 1 23 1410 1432 1410 1433 0.96
Sequence Information
- Coding Sequence
- aTGGAGCAGCTAGTACAATGCCCTGTATGCACATTATATTTACACAATGGAATGTCTTTGGAATCTCATTTGGACACACATCCCAAAGACCAAGTTATTAAAGCTCTCTGCTCAATGTCATCTAGTAAGAGCAATTTTGGGAGTCGTGCTTCAACACCTATGCACTCAGAGAGGTCCTACAGAAGTAGATCAAGGACACCAGCTACTGATGATGTTATGCGGTGGAACAACCATAATGATTATGACCGATACTGGAGAAAAACACCAAGTAGAACACCAAAGACTGCAACAATAACAAGAAGTGAAACTCCTGAAGCTAGAAGTGATCTTGAAGTTAGCAGGACATTAGTGAATGCCGATGTGAATTCAATCTCTTCATACTGCAGTAATACATATCCTAACAAAATTGACAGAACTGAAAGTGGCCCAATGTTATCACTGAGTACTCATTCACAAAAGACAGCCTCCGATTATGATACACCCTACCACTATTTTcaagaaaaagaagaaaaggAAATTAAATTCTCTCGTAGTGCTGAGTATACTTCTATGAATTCTGTCAACAGTTACAATCTGCCATTAGGAACTTCATGTATGAAAACGCAGCCGACCATGCTTGCACCAGCCCCTGCCCCTAAAAGGTCAAATGAGGTTGTTAATCTCCTAactgcaaataaaaaaacaaatgattacaTAAAAGTTCTTCCTAATACTAACAATATTGCTCTTGTAAAAGCTAACATGGGATCACTACAATATATAGCTCCTGGCGTAATGATGTCAACTCCTACTTTTGTTCAGAAAAATCCGCAAAGCAACTTGTTGGTTACCAATGTTCAAAACTCATCTCCAATTGTACAAAGTAAACTCACTAATCAGTTGAACTCAAACCAGTATACACAAGTGACACCAAGTTTAATGACACCAAATACAACTGTGGTGACACAGAACTCTCAGATAATATACAGTGAGATTCACAATATTGATGGTAAGAGATACTTACCAAGTGTAGTTGGTCAAGAAAATGTCACAAATGTTGCTCAAACAAACTCTTTGTATCAGAATGTAATGGTTGTTGATCAGTTCGGCAACACATCTTGTGTTTACACAACCCCGCAGCAGCTATTGCCAAAACAAAATACTAACATCTACCACCAGAGTACTAGTGCTGCTATAGACAAAAATAGCACTGACCCAAATAAAACTCTGGTGATTGAGGTTGGTCCAATTATACCTCCACCAGCTGATGTGTGCGATGCTACAGCCAGTAAAGTGATTACAAGACCTGAAACATTATCTGTTCCACAAACAAGACCAGAAAAGGTGGATCCCCAAAATGAAACATCAGGAGTCAACAGAGGTTTGAAAATTCTCAGTAATGTAAAAGTAGAAGTTCCAGTTCAACATCATAAGAATTTATTGAACACTGTTGTAGATTTAACTCTGCCAAATGAATCTGAATATTCAAACAGATGTAGAACCCCTGAAAGGATCTTACCAGACATTGAGTGTTCATCTAAAGTTTATGATATCAATGAAAGTTCAATGCCTTCAGCTTCAAGTGCTGATGTGAATATGTCAAATACATTCTCTGTTATAAAGAATGTTGGTAATCCACCATCATACAAAGAGACTAAACAAGTTGAAAATAAGATACCTGAAAATGAATCTTCAGACAGCTGCCCTGTACCAGATCTGATTTGTAATGAAAAACCTTCCATTTCACCATGTAGTGAGTTGTCTGATAATGGGGATAATGCTACAACTCACCACCATATGATTAATACAGAATCATGTAGCCAAGTGCCTGAAGAATGTTCTAAAGAGATTAAAAAAGAGCCTTCAATTCAAATGCCTATTAGAACATATAAAAGCAATCCCCTAAGACTGAACAACATTTTTGTGAAGAAGCATAAAAAGGTACTTCATATCAAGAATGCTCGGGCATTTCCAGTTGCAAGCACATCAAGTTGTACTGAAGATATTAAGTCTGAAGAATTTAAAACAATACCAAAATTACCAGAAGATTTTACTGTGACTAAAATACATACAGAAAGAAGTGACACGTTACAAAGAAGTGGTAAATTAGAGACAGTTTCAATTAACACCATGAAAAATGGTGATGATTTTGATGCGGACACTGAAGAGCAGTCTATGGATATGGAACTGGAACCAGTTACAGAAACCAACTTGCACCAGTCTAACCAAGCTCCAAACACCATAGATCTGACTCAAGTTAAAGATGAAGTAAACAGCAGCCACGAGTTTAGTAATCATACTAATTTGTCAGAGAGAGAATTTACAGAACTTGAATCTATACGACCCATCAATGTGGTTCAGTATAACAACTTGGTTGATGATTTTGATGATGACTCCCATGACAGAGAATTACTTGATTTAGAGGCTGCCtccaaaaataaacattttgtgAGCATGATGAATGACAACTATTTTGGTGATAACATTTATGCTGATTACTTTACACCAGATAGAGTAGAAAGTTTTGATGCTGTAAGAGAGTCTACAGCATTCGGGAAGGAACCCCAAAAGGATGGGTCATATTTATGGGGCGAGTCTTCACAGAAAGTTGGGGAGTTTGTATTGCCTAACTTCATTCATGAAAGTTATAAGATTGCTGAAAGTCATGGCACCTATGCATTAGGAAGCAATGTGCTTGATGTGGTTAGGAACGAGGATGTGAGTGACAGTAAAGCGGATGTGCTGAGTCAAGACCGGACGGAGGATCGGCCACTCAATATCTGTGCTGATGAAAGGATGCCTCCAAGAGGCGAACTTAGCGGTCAGGAAAGTAATGGAGACATGGAAGCATCTTGGTCTGggATGTATCCTGAGGCGGCCCCAGAGCCATACGATCTGATTGCCCGCGAAAGTTGGATATCAGATGCGTCGGATATGGACAGCAATGACAAGAGAGATAATCTCGAGGACCTAACAAAACCTCAGTTATACCCATGTATGTCCTGCGGCGCCCAGTTTCCTCAAATGAAGGAATTGAGGGTCCACCGAGCCGAGTGCCTGCCCCCACCTTCTGGGTCCTCGGATAATAAGAATTACAGAATCACTGCTAGAACTATCAAGAAGGAGGAAAAGACTGATGAGAATATATTGGCTGGTATGCTCCAAGACTCAAAAGCGGGCATCACACAGACAGTTATCGAAGTGTTTGATCCACTCAATCCTCTGGTAGACTCAAAGCCAACTCTAAGTATCGTAAAACAAGAAACCAAGAGGCGAAGACGAGACTATGTCTGTCCAACGTGTAAAGAGGACCAATTGACTGATGTGGCTTTTCATGAGCATCTCAAAATACACCCGCTGGAGTGTTTGACGTGTGGCAAATGCTTTTTCCGAAGAGCTAATTTGGCTTTGCACATCAAAACGCATCTCGGGATAAAGAACTTTAAATGCGACATATGTGAGAAAGGTTTCATAACGCGCCAGAAATTACTAGAACACCACAATGTGCATACTGGACGGACTCCTGTGAAGTGCACACTGTGTGACCAAAGCTTTAGACGGTACTCCAACATGGTGCAGCATAGGGACCGCCACCACTTCAATAAGAAGCCCAAAATCCGCGACTACGTTTGTCCTTGCGGCGAAGTTTTCCATTCGCGGGCCAAACTACGCTGGCACAAAGAAACCCACGACGGAAAGCCCAAAGCCTGTCAATACTGCAGTGATAAGTTTGTCCACATGTCCAGTTTAACTAGACACGTGCGAAGAACGCATAATGTTTATTATGTGAGGAGCGATCTGAGCAGGAAGAATGAGAATGTCACGTGTCCTATATGCAAGCAGGTATACCTCAGAGCAAATCTAAAAACCCACATGCGAACGCACAGCGGGAAACGACCGTACCTTTGTGTGATTTGCAACAAAGCCTTCACAACTCCTTGGAACCTCAAACTGCATCGATGGACACACATGTCACGTTCAGCCAAACCTTACAAATGCGGGTTGTGTAAAGGTGCCTTTATCCGACAGTCCGATTATATCTCACATATGAACGCACACAAATCTGTCAGACCTTACACTTGTAACTACTGCGGGTGCCAATTCGTTAGGAAATACAATTGCCAACGACACGTTAGAGaacatgaaatggttaagaaaTATATATGCAAAGTGCCCGATTGTGGAAAGTCTTTCCATAGAACTTACTACTTGTCTGAGCATATGAAAGTGCACAGTGGGGCCAGACCGTTTTCGTGTAACATCTGCGGGAAAACTTCGAGCAATAAATCTAATCATAATAAGCATATTAAAATACATCATGCTCGGGAACCGGTCGCTACGGAAGCGTAA
- Protein Sequence
- MEQLVQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCSMSSSKSNFGSRASTPMHSERSYRSRSRTPATDDVMRWNNHNDYDRYWRKTPSRTPKTATITRSETPEARSDLEVSRTLVNADVNSISSYCSNTYPNKIDRTESGPMLSLSTHSQKTASDYDTPYHYFQEKEEKEIKFSRSAEYTSMNSVNSYNLPLGTSCMKTQPTMLAPAPAPKRSNEVVNLLTANKKTNDYIKVLPNTNNIALVKANMGSLQYIAPGVMMSTPTFVQKNPQSNLLVTNVQNSSPIVQSKLTNQLNSNQYTQVTPSLMTPNTTVVTQNSQIIYSEIHNIDGKRYLPSVVGQENVTNVAQTNSLYQNVMVVDQFGNTSCVYTTPQQLLPKQNTNIYHQSTSAAIDKNSTDPNKTLVIEVGPIIPPPADVCDATASKVITRPETLSVPQTRPEKVDPQNETSGVNRGLKILSNVKVEVPVQHHKNLLNTVVDLTLPNESEYSNRCRTPERILPDIECSSKVYDINESSMPSASSADVNMSNTFSVIKNVGNPPSYKETKQVENKIPENESSDSCPVPDLICNEKPSISPCSELSDNGDNATTHHHMINTESCSQVPEECSKEIKKEPSIQMPIRTYKSNPLRLNNIFVKKHKKVLHIKNARAFPVASTSSCTEDIKSEEFKTIPKLPEDFTVTKIHTERSDTLQRSGKLETVSINTMKNGDDFDADTEEQSMDMELEPVTETNLHQSNQAPNTIDLTQVKDEVNSSHEFSNHTNLSEREFTELESIRPINVVQYNNLVDDFDDDSHDRELLDLEAASKNKHFVSMMNDNYFGDNIYADYFTPDRVESFDAVRESTAFGKEPQKDGSYLWGESSQKVGEFVLPNFIHESYKIAESHGTYALGSNVLDVVRNEDVSDSKADVLSQDRTEDRPLNICADERMPPRGELSGQESNGDMEASWSGMYPEAAPEPYDLIARESWISDASDMDSNDKRDNLEDLTKPQLYPCMSCGAQFPQMKELRVHRAECLPPPSGSSDNKNYRITARTIKKEEKTDENILAGMLQDSKAGITQTVIEVFDPLNPLVDSKPTLSIVKQETKRRRRDYVCPTCKEDQLTDVAFHEHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNFKCDICEKGFITRQKLLEHHNVHTGRTPVKCTLCDQSFRRYSNMVQHRDRHHFNKKPKIRDYVCPCGEVFHSRAKLRWHKETHDGKPKACQYCSDKFVHMSSLTRHVRRTHNVYYVRSDLSRKNENVTCPICKQVYLRANLKTHMRTHSGKRPYLCVICNKAFTTPWNLKLHRWTHMSRSAKPYKCGLCKGAFIRQSDYISHMNAHKSVRPYTCNYCGCQFVRKYNCQRHVREHEMVKKYICKVPDCGKSFHRTYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHIKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -