Basic Information

Insect: Bedellia somnulentella
Gene Symbol: -
Assembly: GCA_963576735.1
Location: OY755184.1:730172-740308[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.84 1.2e+02 4.7 1.7 3 23 105 125 103 125 0.97

2 16 0.043 6.4 8.7 0.2 2 23 129 151 128 151 0.94

3 16 0.0056 0.82 11.5 0.1 1 20 411 430 411 432 0.95

4 16 0.037 5.4 8.9 1.4 3 23 443 463 442 463 0.97

5 16 0.0046 0.67 11.8 1.9 1 23 514 537 514 537 0.97

6 16 2.9 4.3e+02 2.9 0.3 3 20 616 633 614 637 0.78

7 16 4.4 6.5e+02 2.4 0.7 1 22 642 663 642 665 0.75

8 16 5.6e-06 0.00082 21.0 1.1 1 23 671 693 671 693 0.96

9 16 2.1e-06 0.00031 22.3 1.8 1 23 700 722 700 722 0.98

10 16 7.9e-05 0.012 17.3 2.3 1 23 727 749 727 749 0.96

11 16 0.00024 0.036 15.8 3.6 1 23 755 777 755 777 0.98

12 16 1.1e-05 0.0017 20.0 3.5 1 23 783 805 783 805 0.98

13 16 0.00013 0.019 16.7 2.7 2 23 812 833 812 833 0.98

14 16 0.0079 1.2 11.0 0.0 2 23 840 862 839 862 0.94

15 16 3e-05 0.0044 18.7 0.3 1 23 867 889 867 889 0.97

16 16 4.8e-05 0.007 18.0 2.5 1 23 895 918 895 918 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.84	1.2e+02	4.7	1.7	3	23	105	125	103	125	0.97
2	16	0.043	6.4	8.7	0.2	2	23	129	151	128	151	0.94
3	16	0.0056	0.82	11.5	0.1	1	20	411	430	411	432	0.95
4	16	0.037	5.4	8.9	1.4	3	23	443	463	442	463	0.97
5	16	0.0046	0.67	11.8	1.9	1	23	514	537	514	537	0.97
6	16	2.9	4.3e+02	2.9	0.3	3	20	616	633	614	637	0.78
7	16	4.4	6.5e+02	2.4	0.7	1	22	642	663	642	665	0.75
8	16	5.6e-06	0.00082	21.0	1.1	1	23	671	693	671	693	0.96
9	16	2.1e-06	0.00031	22.3	1.8	1	23	700	722	700	722	0.98
10	16	7.9e-05	0.012	17.3	2.3	1	23	727	749	727	749	0.96
11	16	0.00024	0.036	15.8	3.6	1	23	755	777	755	777	0.98
12	16	1.1e-05	0.0017	20.0	3.5	1	23	783	805	783	805	0.98
13	16	0.00013	0.019	16.7	2.7	2	23	812	833	812	833	0.98
14	16	0.0079	1.2	11.0	0.0	2	23	840	862	839	862	0.94
15	16	3e-05	0.0044	18.7	0.3	1	23	867	889	867	889	0.97
16	16	4.8e-05	0.007	18.0	2.5	1	23	895	918	895	918	0.98

Sequence Information

Coding Sequence: ATGAGTTCTGAGGATTCGGATGATGAACCGCTATCAGTATTGGCTGCTGTCAAGAAAGCGGCCCCAAAAATGAAgaaagtaaaaaagaaacagCCTTCAAAACAGAAATGCTTAAAACGTTTGGCCGTAACTATAAAACCCGCCGGCCCAAGACTTTACCCAGCTAGCATGGTTCCAAAGCCTACAGACGCTTGGCTATATCTTAAAGATTTCAACCTAACAGGGCCCTTCAGCTGTCTATTGTGCTCAGAGTGGTTTATCAGCAGGACCAAAGTAGTTATAcactatattttaaatcatgGAAAGGATTTTTGTGGCATATGCAGATATTTTGTACCTGACCGTGATCATTGGCATATGCATGTAAAGTCCCACTCACCATGGCAATGCTCTCAGTGTCCTCTAAAATATGAGGAAGAAAAAGATCTGCGACAACATTTAAGTCAAGAACATAAATTGCTACATTGCCAATTGTGTTTCTTTCAAATGCCTGATGATGACTCATATGGAGACCACCTACAAGATAAACATAATGTAACTAATATAATGGCCAAAGATGAAGAGCCATTGTGGCAAATGAATAATGATGGCTCAACAATGTATCTTTGTTTCCTCTGCTCGAAATCCAACATACCAACTAATAATTTCTGCAATCACTACATGAGTCACCACCGCATCACTCTTAAATGCTTCACAGGCATGCTTTCAGGAAAAGAGCATTTGTTTCGTATAACTGGCGCAAACATTACTATGGATTTTGTGCAAGAACAATTGAAGGAAAGTCAGTCAGGCTATCTTGACTTAGACCCAAAACTAATAGTTGAATCTAACAAGACTTGCAATGAATCCACTAGCTTCTTAAAAGCTCTGATACCAgaaataaaacaagaaatagTAAGTGACCATGAAGACACAGATATTAATAAGAAACCAGAAGATGAGGACATCTATGAAGAGGGCCCATGGAAAACATATGAAGGGACAACAGATTTTGATGTTACTGCAACTGAAGTTATTCTATTAGAAAAATGTTATGTCAAGTATGTTAGTGAAATCTTAGAAGATGTAAAGTTGCATACTATTACAGAAAACTCCTAtattaattatgaaaataataatttggatGCCAAGATTGATGAAACGTGTCTCTACTGCGAACACAAATGTGAAACAGGCTCTGAAATGTCAACTCATCTGTATAAAGCCCATGGGGTGAAGACAGCACCACTGTATTACTGTCGAATATGTGCAGCTACATTTGATAGCTCTAGTGAACTAACAACTCATACTGCTGAAGAATTGAATGATTTTATGGATCTCTGGTTATGTCAGTTCTGCGATAATGAGTTTAGTAACAGGGAAGAGACTCGTAAACATTTACAGTATCACTGGGACAACTTGGAGCAGAGTTTAGAGAACTGTTTTAGTCCCCATTTGGGATTCAAATGCAGATATTGTCCAATGTTGTTCTGGAATGAGCCTGGCCGAGAAACCCATCATAATATTGAGCATTTTAGAGAGAAAACGAGAGAGAATTTTTATCAGTGTGAACTTTGTTCTAGTCGTTTTAGTGACCAGGTATGGTTCACCCACCATTACGTGACAGAGCACTGCCAAGAAGagaaaattcccctttatttgATAAAGTGCTGTCTGTGTTGTCTAGTGCTCCCAAATGTAGAAGAGATGAGAACACATTTTGCAAAGCAACATCCGGAAAAACGGAAGTACTACTGCTCGCTAGATTCGTGTAGGTTTAAGCCACTTGCGAAGAAGAAATCTTTTAAACTTCATCTTAAGATGATGCACAGCAAAAGCAAGGTCCCCGAGCGTCTAAGCGTGATTTGTGGTCTCTGTTCTCGAGAGTTCAGCAGTCAGCGGGCGCATTCTACTCATGTGGCGCAGGTTCACGGCCCGGGCCGGTTCAAGTGCAAGATCTGTCAGCTGTCTATGCAGACTATGGATGAAAGAAAGCTGCATTACCTTCTGCAGCACCCAGGCCGCCACCCGTTCGAGTGCAACGTCTGCGGGAAGTCGTTCCCATACAAGTCGTCTCTATACACGCACCGCACTGAACATAGTACGGCAAAACACCCGTACGTGTGCCCGCACTGTAGCAAGGTTTTTACCAAGCGCGACTCGTACCGCGAGCACATGCTGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGCGGCCCTACGCCTGCCCCTACTGCGAGCGCTGCTTCTCAGACAAGGGCGCTTGCAACAGCCATCTCAGGACGCACACGAAAGACACGTCATTCGTCTGCATGTACTGCGGACAACACTTCGCACAAAAGTCCAAACTTACCTACCATATCAGAAAACATACAGGCGAAAACCTAGAAACGTGTAAGGTCTGCTCGAAAGTGTTCACCAGTGTGTGTTCTCTTCGCGAGCACATGAAGGTTCATAAACGAAGAGAGCCCGTCTCTTGCCCACTTTGTGACCGCAAATACCAAGACAGTCGCGCCATGGCCCGCCATTTGGCCGTCGGTCACAGCGCGGCCAAGTTCAGCTGTCCGCTGTGCGACAAGACCGTCACCAGCAAGGTGTCGCTGCGACAACACGTCGTCACGCACGGACGGGTTAAGACATTTCAGTGCAAAATGTGTTCAAAATCATTTGCTGTTAAGAAGTCCATGTTAAGACATTTACGCTCGCGCCACAGTCTCAACCTCAAGAACTCAATAAGCCAAATAAGAAAACACGCTACAGTCCTCGACGCCCGAGACTGCGAAGTCGACTTAGATGATGAAACCATGCTTAGTATCTTTGGTCCTCCGAAAAAAGTCTTCAAAGGACCTGTATTCGTCCCAACACCTAACGATAACCCAGAAACATCAACTGATTATGCCAACGGTACAGATATGGCTGAAGAAAAGACAGGTGATGATAGTCAAGATGATgaaagtgatgatgatgatgatgaaagcgCTGATGATGCCCCGCTGACGAAGATCAAATCCGAACCTATGAGTGAGGGAGAGTTGGAACCTACTGATTTCGTGTCCGTGAAAATTGAACCGATTGATGAATATGAGGAGCAAGCAAACTAG
Protein Sequence: MSSEDSDDEPLSVLAAVKKAAPKMKKVKKKQPSKQKCLKRLAVTIKPAGPRLYPASMVPKPTDAWLYLKDFNLTGPFSCLLCSEWFISRTKVVIHYILNHGKDFCGICRYFVPDRDHWHMHVKSHSPWQCSQCPLKYEEEKDLRQHLSQEHKLLHCQLCFFQMPDDDSYGDHLQDKHNVTNIMAKDEEPLWQMNNDGSTMYLCFLCSKSNIPTNNFCNHYMSHHRITLKCFTGMLSGKEHLFRITGANITMDFVQEQLKESQSGYLDLDPKLIVESNKTCNESTSFLKALIPEIKQEIVSDHEDTDINKKPEDEDIYEEGPWKTYEGTTDFDVTATEVILLEKCYVKYVSEILEDVKLHTITENSYINYENNNLDAKIDETCLYCEHKCETGSEMSTHLYKAHGVKTAPLYYCRICAATFDSSSELTTHTAEELNDFMDLWLCQFCDNEFSNREETRKHLQYHWDNLEQSLENCFSPHLGFKCRYCPMLFWNEPGRETHHNIEHFREKTRENFYQCELCSSRFSDQVWFTHHYVTEHCQEEKIPLYLIKCCLCCLVLPNVEEMRTHFAKQHPEKRKYYCSLDSCRFKPLAKKKSFKLHLKMMHSKSKVPERLSVICGLCSREFSSQRAHSTHVAQVHGPGRFKCKICQLSMQTMDERKLHYLLQHPGRHPFECNVCGKSFPYKSSLYTHRTEHSTAKHPYVCPHCSKVFTKRDSYREHMLIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPYCERCFSDKGACNSHLRTHTKDTSFVCMYCGQHFAQKSKLTYHIRKHTGENLETCKVCSKVFTSVCSLREHMKVHKRREPVSCPLCDRKYQDSRAMARHLAVGHSAAKFSCPLCDKTVTSKVSLRQHVVTHGRVKTFQCKMCSKSFAVKKSMLRHLRSRHSLNLKNSISQIRKHATVLDARDCEVDLDDETMLSIFGPPKKVFKGPVFVPTPNDNPETSTDYANGTDMAEEKTGDDSQDDESDDDDDESADDAPLTKIKSEPMSEGELEPTDFVSVKIEPIDEYEEQAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -