Bsom023287.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755184.1:13977490-13998942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.041 15.6 3.4 1 23 234 256 234 256 0.98 2 11 0.003 0.44 12.4 10.3 1 23 262 284 262 284 0.96 3 11 0.00064 0.094 14.5 7.5 1 23 290 312 290 312 0.98 4 11 0.00074 0.11 14.3 1.0 1 23 318 340 318 340 0.97 5 11 5e-06 0.00074 21.1 1.0 1 23 346 368 346 368 0.97 6 11 1.1e-05 0.0017 20.0 0.1 1 23 374 396 374 396 0.98 7 11 0.0016 0.24 13.2 0.3 1 23 401 423 401 423 0.95 8 11 0.12 17 7.4 1.9 5 19 433 447 430 453 0.88 9 11 7.9e-05 0.012 17.3 1.4 1 23 540 562 540 562 0.98 10 11 0.0013 0.19 13.5 3.3 1 23 624 646 624 646 0.96 11 11 3e-05 0.0045 18.6 4.3 1 23 656 678 656 678 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACACCGAATAATGTTTCGGGTTTCGGTTACGCCTGGGGCTTCACGAGTTCAGGTGAACTTACCAAAAATGAGGTGGAGACTCCAAGCAGTCTTAGCTACACCCTGGGGAATTCGGTGTCTCCTGAAACCACCCTGACTGTTATGTCCCACAAGGCCCCACAAGTGCAGGAGAAAGTGGGAACTGTGGTGGCTGTATCCAACAATACAGCTCAGGTGACAAGGGTAGTTACGAGCGGAACACCCCTTGCTGGGCGGCGCGCTATGTTTGTGCTGAATGAGGCACCTACTCATACTATTAATAGGGTCTCACAACAGAACCAAACTGCTACAATTCAAACTACAAACATATCAGCAAAACCCTTTATGACACCACTGGGGCCATTACAACTGACAGCTGAAGAGTGCAACGAGATTCTCATGAAGCGGGCTCTGCAAGCTCAGGGGATCGCCACATCTGTAATAGATACCTCACAGCTGAACCACTCATTGCTAAATGGTACTCTGAAAGGGCTGGCAGAGGTAACAAATCAGCAAGAAATGCAACAGTCACCAGTGCAACATCAGTTACTACAGCATACAAAGCAAGAGCCTGGTACAGCAAATAATTCTCCCAAGTCGGTGTTCAGCCTATCAGACCCATTATCAAACAACAGTCTGCAAACCCCAGTAGCTGTGAAAGAGAGGCCATATTCCTGTGATGAATGCGGCAAATCATTCCTGCTCAAACATCATCTTACTACGCATGCGCGTGTACACACTGGTGAGCGGCCTCACTCGTGCGCGCACTGCGGCAAAACATTCGCGCACAAACACTGTCTCAACACACACCTGCTATTGCACAGTACCGACCGTCCATACCGCTGCCAACAGTGCAAGAAATCCTTCACCCTCAAACATCATCTTCTCACGCATTCTCGGGTACACAGCAGAGACCGGCCGTTTGTCTGCGGCGAGTGCGGCCGAGGGTTCCCGTtgaagcgccatctagtgacgcACAGCAAGTACCATGCCGGGGAGAGACCATATGTGTGCAATGATTGCGGAGAGAGTTTTGCGCAGAAGGAACACCTGGTGATGCACAGCCGGTTCCACGGCTCGCTGACGCCGTTCCAGTGCGCCGAATGTGGGGCTTCATTCGCTAGGAAGTTCCAGTTGGTAGCGCACGGTCGAGTTCACGGGAAAATGCCGCATGCATGCCCGGCTTGCGGGAAGGAGTTTTTGCAGAAGAGGACGCTGGTTGCGCATATGAAAGCACACACGGGCGAAGGCGTCGTGGCATGTATTGAATGCGGTGAAGCGTTCAAAACCAAGACAGAGTTACACCAACACTGCAAAGTGACGAGGCATTGTATGCAACTTAACAACACGACGCATCATCAGACTCAACAGCAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAGCAACAGCAGCAACAACAACAGCAGCAACAGCAACAACATCAACAACAACAGCAAGTTCAAGTACAGATGCAACAGCAAACTGTCATAAAACAAGATGACTTCAAACCACAAATTGTTCAGGTTATGAGTTCGGATGGCCAAATAATAGGCGAAAAAACAACGCCAGGATACAGCTGTCAAGAATGTGGTTCCTGTTTCAACACCAaggAGGCGCTGTCTCTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTGACCGCCGCGCTGCAGCCCGGGCTGGTGGCCTCGCACGCCAACAACAATCAAAATATCCAAATTATACAGTCAAACCCAAATAATTTAGTACATACGCAAGTAATATCATCGCAAAATCATCACATGACGCCACGGCCGAAGATTCATTTCTGCGTTGATTGCGGGAAAGGATTCGCCGCGAAACATGGCCTTTTAGCGCATCATAGAAGacaTCCCGATGGCAACTGCACGATCCGAACCCACGTGTGCGATCAATGCGGGAAAGCATTTTTCCAGAAAAACCATCTTATGCTGCATCAGAGACAACATATGGATCTACCTAATAGGAATTCACAACAACAGCAACAACAACAGCAGCAACAGCAACAACAGCAGCAGCAACAACAGCAAcagcaacaacaacaacaacagcaGCAACAAAATCAACAAGTTCAACAAGTGGTGGTACATCATAATGTTGGCAACTCGTTAGATCTAGATAATGATCATCAGCAACCGGCATTGATACAGGTGACGAATCGTTCCGGGCAGGTGATCGGCAACCAGATCGTGGTGAGCGGCGTGCCCCGGCGCCAGCTGCTCGGCTCGCAGCTACACATCGTGCAGCGAGACAAACTTAACATACAGCCCAAACAGGAGCGGATGCATGCAGGCGACGCCAAAGAAATTGGTAACCTATTAGTGACGGGCCGCGGAGGCTCTCTGATCAAGTACGAAATCGCCCTCGCGCCCGGAGTGCAAGTACAAACCATGGACTAG
- Protein Sequence
- MCMPTPNNVSGFGYAWGFTSSGELTKNEVETPSSLSYTLGNSVSPETTLTVMSHKAPQVQEKVGTVVAVSNNTAQVTRVVTSGTPLAGRRAMFVLNEAPTHTINRVSQQNQTATIQTTNISAKPFMTPLGPLQLTAEECNEILMKRALQAQGIATSVIDTSQLNHSLLNGTLKGLAEVTNQQEMQQSPVQHQLLQHTKQEPGTANNSPKSVFSLSDPLSNNSLQTPVAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHSCAHCGKTFAHKHCLNTHLLLHSTDRPYRCQQCKKSFTLKHHLLTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCNDCGESFAQKEHLVMHSRFHGSLTPFQCAECGASFARKFQLVAHGRVHGKMPHACPACGKEFLQKRTLVAHMKAHTGEGVVACIECGEAFKTKTELHQHCKVTRHCMQLNNTTHHQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQVQVQMQQQTVIKQDDFKPQIVQVMSSDGQIIGEKTTPGYSCQECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVASHANNNQNIQIIQSNPNNLVHTQVISSQNHHMTPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGNCTIRTHVCDQCGKAFFQKNHLMLHQRQHMDLPNRNSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNQQVQQVVVHHNVGNSLDLDNDHQQPALIQVTNRSGQVIGNQIVVSGVPRRQLLGSQLHIVQRDKLNIQPKQERMHAGDAKEIGNLLVTGRGGSLIKYEIALAPGVQVQTMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -