Bsom039619.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755198.1:9044274-9045974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0022 0.32 12.8 4.5 2 23 102 124 101 124 0.97 2 15 0.0016 0.24 13.2 1.3 2 23 129 151 128 151 0.95 3 15 0.00039 0.057 15.2 0.3 3 23 164 185 163 185 0.94 4 15 5.3e-05 0.0078 17.9 4.6 2 23 193 215 192 215 0.95 5 15 4.6e-05 0.0069 18.1 1.5 2 23 224 246 223 246 0.97 6 15 0.00082 0.12 14.1 0.4 1 23 252 275 252 275 0.97 7 15 0.00077 0.11 14.2 0.3 3 23 283 304 281 304 0.96 8 15 3.5 5.2e+02 2.7 0.0 3 23 319 340 318 340 0.91 9 15 0.00034 0.05 15.3 0.5 2 23 347 369 346 369 0.94 10 15 0.17 25 6.9 4.1 2 23 379 401 378 401 0.92 11 15 0.00064 0.094 14.5 1.9 3 23 410 431 409 431 0.94 12 15 0.00093 0.14 14.0 0.5 2 23 442 463 441 463 0.97 13 15 0.029 4.2 9.3 1.5 2 23 469 492 468 492 0.94 14 15 0.0013 0.18 13.5 1.3 3 20 500 517 498 518 0.94 15 15 0.011 1.6 10.6 0.0 3 20 530 547 528 549 0.91
Sequence Information
- Coding Sequence
- ATGGATGAGGATGGAATAGTTCGCATAAAGGTAGAGATATTAGACGTGGAATACGACGCACCAGAAGTGATTGCAAGCGAAGATGAAGTGGAGCAGAAACCTAATATTGATGACATTGAAATTGTGGAAGAGCCGACCACTATAGAATATATCGACGAATACCTCGATGACGCAATCGTAGAAGATCTAGGGGATGACGAGGGAATACTATTAGAAGTTGCTTCATTGACTTCAGAACCGGAAGAGGAAACCAGAAAAGTAAAGCGGAAAAGAAAGAGCCAAGCCAAACCGATAGAAGATATCAAATGTAAATTATGCAATCAAGTGTGTCGTGGTAAAAGACATCTTAATATGCACATCAAAAGAGCACATTCAGAAAAGTTGCAGTGTAATATCTGCAACAAAGAGTTTAAGTTGCGATCGAGAATGAATGAACACAAAAGCACAGTGCACGGGGAAACACATCCGGTGTATTTGAAAGATGTTCTATGCAGCATATGTGGCAAAGCGTTTAACGCGCCGAAAAAACTACTCAACCATATGTTCTACACTCATCCCGAACCAAATCAAGCCTGCATTTGTGATTCGTGCGGAAAACATTTTCGAAGCAAGTACAAACTCAAAATACACATAAGAAACGTTCATTCTAATGAGAATAAGTGTGAAGTGACTTGTGTCAAATGCAACagaatttttaaaaatgaaaagatGTTACAAATGCATCAAAGGACATCACATCCCACAAACGTAACTTACAAATGCAAAGAATGTGACGCTATGTTTGAAGCAACAAGCAGTTTCAAAGAACACTTAGAAAAGGTACATGATGTTTCGAAAAGTCTCGCTTGTGACGTGTGCCTTAAAATTTACAAGtctattaaaaatatgaaagtaCACATGAGAATGTTGCATACAGAACTAAAATACATCGTTCTTGACAACGAGATGCTTTTGTGTGTTGCTTGTGAGAATGAGTTTGCAACTGCTACGGAAGTGGAAGATCATTACAAAAGTGCACACTCGGAATCTACCGGAATCCAGTGTCATTACTGCAACAAAGTCGTTGCTACTGAAAAATTTTTAGAGCGTCATTTGGCTAATGTACATCAAAATGAATTGGAAAAAGACGATTGCATATGTGAATACTGCGGGCTTAAGTTTAGGCACAACCTTCTTAGAGATAGACATTTAATTCGCAAACATAAAAATGAGAAGCCGAATAATATGTGTCGTATTTGTAATATGAACTTCAAATCGAAAGTGTCTTTGAGAAAACACAATCGACTTTTACACGATGAGACAGCGCAAAAGAAGCCCAAACAAAAATGTTTGATTTGTGACGAAGAATTCTTCACTAGGAAGGAGTTGTATGCTCATAAGCAGATACATGAAAATGAAGAGTTAAAATGCAAATACTGCAATAAGAAAAGTTATGCCAAAGTGTACGATTTGTTAAGACACTACATTCGGTATCATGAGCGTAGAGAAATGGTGAATTGTGACGATTGCAATTGCAGTTTTGGGACGAAGAGAGAGTTAACCAGACATAAGGCAGAAGGTACATGTGTGATAGTCGCAACAAGCATATGTCCGAAATGCGGAGAAATGTTTAACGACGATGATGAGATGAATGAGCACAAATCTGTGTGTGAGAATGATGAAGAGATGGAGACTCTGAAAATGGAAGATGTTGATGATTAA
- Protein Sequence
- MDEDGIVRIKVEILDVEYDAPEVIASEDEVEQKPNIDDIEIVEEPTTIEYIDEYLDDAIVEDLGDDEGILLEVASLTSEPEEETRKVKRKRKSQAKPIEDIKCKLCNQVCRGKRHLNMHIKRAHSEKLQCNICNKEFKLRSRMNEHKSTVHGETHPVYLKDVLCSICGKAFNAPKKLLNHMFYTHPEPNQACICDSCGKHFRSKYKLKIHIRNVHSNENKCEVTCVKCNRIFKNEKMLQMHQRTSHPTNVTYKCKECDAMFEATSSFKEHLEKVHDVSKSLACDVCLKIYKSIKNMKVHMRMLHTELKYIVLDNEMLLCVACENEFATATEVEDHYKSAHSESTGIQCHYCNKVVATEKFLERHLANVHQNELEKDDCICEYCGLKFRHNLLRDRHLIRKHKNEKPNNMCRICNMNFKSKVSLRKHNRLLHDETAQKKPKQKCLICDEEFFTRKELYAHKQIHENEELKCKYCNKKSYAKVYDLLRHYIRYHERREMVNCDDCNCSFGTKRELTRHKAEGTCVIVATSICPKCGEMFNDDDEMNEHKSVCENDEEMETLKMEDVDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -