Bsom030557.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755190.1:6123335-6133312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0035 0.51 12.2 1.8 2 23 52 73 51 73 0.96 2 12 0.0072 1.1 11.2 0.4 3 23 81 102 79 102 0.93 3 12 0.19 29 6.7 0.1 2 23 110 132 109 132 0.88 4 12 4.5e-05 0.0067 18.1 3.3 1 23 138 160 138 160 0.98 5 12 6.8e-08 1e-05 27.0 2.6 1 23 166 188 166 188 0.99 6 12 7.2e-06 0.0011 20.6 0.4 1 20 194 213 194 215 0.94 7 12 0.11 16 7.5 4.6 3 23 232 253 231 253 0.95 8 12 1.3e-05 0.0019 19.8 0.9 1 23 547 569 547 569 0.97 9 12 8.6e-05 0.013 17.2 1.1 1 23 576 599 576 599 0.90 10 12 0.00073 0.11 14.3 0.3 1 23 607 630 607 630 0.96 11 12 0.00048 0.071 14.9 3.4 1 23 636 660 636 660 0.97 12 12 6.9e-06 0.001 20.7 1.0 1 22 666 687 666 687 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAACTGTATCTTACTTTAGTTTGCCcTTAGGAGAACCACACAACTTGCCTTCGACATCATTGTTGGAAACAGATGATGTGTTCCAGCAGTTTTTATCTGCTGATGATCCGTTGGAGGAGCCTGACCTTAATGGGCCAACTACTCTTCACTGTGAAATATGTTCTAAAAAGTTTGATAATGCTAAGAAATATTATGGACATCTGCGCGTACACACTAAGGATAATCTCTGGATTTGCGACAAATGCCCAGATCAGAGGTTCTCCACTAAGCAAAATCTCATGAAACATTCCTTAGTACACAATCCGTTGAAGAAAGTGTGGAAATGTCCCCAATGTCCCCTTGCATTTGAAGCTCTGTGGAGACTTCAACAGCATCTGTTCGCCAAACATTTAAAACGAAATACACATAAATGTGATGTATGTGAAAAGTCATTCCAGAAGCTGTCAGATTTGAAAAagcataaaaacatacatagtgATGTAAAGCAGTTCAAGTGTACACAATGCGACAAAGGATTCAACACCAAATCTAATCTGAAAGTGCACATGTATACTCATACCAAGGAGAAACCATTTGTCTGTAAGGGATGTGGGCGGAAATACACTCAGCTGTCCAATCTTATTAGGCACAAAGAGAAGTGTCCAAAGTACGGTGTAATAGAAACTAAGGAAACAAGACGCAACCATTGCCGTACTTGTGGCTTGTCCTTTCAATACAAGAGCACGTTGGTTGAACATAGTCTTACTTGTCATACAAATACAGCAAATACTTCTACACAAGCTCCATCGTTACAAATATTATCAGAAAGCAGAACAGTTGATACCATCGTCAACGACCTCTTGTCAGTCGAAGATGACTACCCCATTAGAAGTTCAAATCAAAATATACCTACAGAACTACCCGCCACCACGTTCGAAAGAAATAACGTAAATCCTGAAGAAAATACAGATAACTTGATGCATATTGAGTTCCTTAAAGATATGTCAGAATTACACGCGTTAGATGATGAACTCTTTTATAACGGCATCGACTTTGATAGTTTACCTAATCATGTCTTTGTTAATGAAGAATTTAATCATCCAGAGAGAGAAGCAGAAATACCATATGATTACACAGATGATCAAGAACTATTGAATGCTTTAATAGAAGTAAAAGGTGATAATTTGCCTGAAGATTTACTCAATGTGTATAATGATACAACAAATTTAGCGCCCACTGAAACTACGGCGCCAAATTCAGTATTAGTTAACGAATGCTCAACAATATTTGAAAGTGATGTTGATTTAGAAGCAAGCACAAATCTAGCGATGAATTTGAATCagttgattggagaaaataGTGTTCAGTATGTTTCTACGGAAGATGACGATACatttattataagtttaaaTAGTACTATTGATGCTGAAAAGCTAACTGATATGCTTAATATAGGAGTTGAAGTGTTAAATGAAAATCATCAAGATAAAGAGAAAATTGCAACCGAAGAAGTAAATAAAACAGGGAAAGATGTAGAAGATgcagttgttataaaatattcagaaACTTTACCAAATACTAGTGTAAATAATGAGAACGATAGTAATAATCAAAACAATAAACCTAAAGTGAAGTTAAAAAAGCAAgttttatatgtgtgtgtaacATGTAATAAAGTGTTTAGAAAAAAGGAAAATTACAAATCACATTTAGCAATCCACCAGCCATCATTAAGTCGCCACCGCTGCAAGATCTGCGGTGTGAAATTCGGCTACAAGTCTTCGCTCAACAAGCACGTAGTACAAGCGCACCGACCTGTCGTGCTGCCCGCCTTTACTTGCGAGATTTGTGGAAACGTTTATAAGGCTAAATGGATGTTAAAAAACCACCGCGAGAGAGACCACGAGCGCCTTACTCCGTACGAGTGCGAGCACGAAGGTTGTGGTAAGAAGTTCTACAAGAAGAACGACCTCGACAAACATAGGAGATTTCACACGAAAGAGCGACCGTTTAAATGTGATGTCTGCTTGAAAGCCTTCCCACAGAAGAGCCATCTTCTGAGACACATAAAAAAATTGAACTGCGCTAAATTtgtTAAGAAAAAAGCAAAGGAAATGAAAGCGACAGCTGTGACGCCGACACCTAATGTAGTTATATTCAATCAAGACtgctaa
- Protein Sequence
- MDSTVSYFSLPLGEPHNLPSTSLLETDDVFQQFLSADDPLEEPDLNGPTTLHCEICSKKFDNAKKYYGHLRVHTKDNLWICDKCPDQRFSTKQNLMKHSLVHNPLKKVWKCPQCPLAFEALWRLQQHLFAKHLKRNTHKCDVCEKSFQKLSDLKKHKNIHSDVKQFKCTQCDKGFNTKSNLKVHMYTHTKEKPFVCKGCGRKYTQLSNLIRHKEKCPKYGVIETKETRRNHCRTCGLSFQYKSTLVEHSLTCHTNTANTSTQAPSLQILSESRTVDTIVNDLLSVEDDYPIRSSNQNIPTELPATTFERNNVNPEENTDNLMHIEFLKDMSELHALDDELFYNGIDFDSLPNHVFVNEEFNHPEREAEIPYDYTDDQELLNALIEVKGDNLPEDLLNVYNDTTNLAPTETTAPNSVLVNECSTIFESDVDLEASTNLAMNLNQLIGENSVQYVSTEDDDTFIISLNSTIDAEKLTDMLNIGVEVLNENHQDKEKIATEEVNKTGKDVEDAVVIKYSETLPNTSVNNENDSNNQNNKPKVKLKKQVLYVCVTCNKVFRKKENYKSHLAIHQPSLSRHRCKICGVKFGYKSSLNKHVVQAHRPVVLPAFTCEICGNVYKAKWMLKNHRERDHERLTPYECEHEGCGKKFYKKNDLDKHRRFHTKERPFKCDVCLKAFPQKSHLLRHIKKLNCAKFVKKKAKEMKATAVTPTPNVVIFNQDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -