Bsom037182.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755196.1:3683428-3686867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6e-05 0.0024 19.5 3.1 1 23 136 159 136 159 0.97 2 18 4.2e-05 0.0061 18.2 1.0 1 23 168 191 168 191 0.97 3 18 0.0047 0.69 11.7 0.5 2 23 204 226 203 226 0.96 4 18 0.00026 0.039 15.7 3.9 1 23 235 258 235 258 0.97 5 18 1.1e-05 0.0016 20.0 0.9 1 23 268 291 268 291 0.97 6 18 4.6e-05 0.0068 18.1 0.4 2 23 317 339 316 339 0.96 7 18 6.6e-05 0.0098 17.6 1.2 2 23 349 371 348 371 0.97 8 18 0.0025 0.37 12.6 1.4 2 20 376 394 375 395 0.93 9 18 2.2e-05 0.0033 19.1 0.3 2 23 401 423 400 423 0.95 10 18 0.054 8 8.4 3.6 2 23 433 455 433 455 0.94 11 18 0.00014 0.021 16.5 4.9 1 23 460 483 460 483 0.95 12 18 8.4e-05 0.012 17.2 0.6 1 23 494 517 494 517 0.97 13 18 0.87 1.3e+02 4.6 2.9 2 23 546 568 545 568 0.92 14 18 0.0031 0.45 12.3 3.2 2 23 603 624 602 624 0.97 15 18 2.8 4.1e+02 3.0 1.1 2 23 631 654 630 654 0.93 16 18 1.8 2.6e+02 3.6 1.1 1 23 661 683 661 683 0.91 17 18 0.00033 0.049 15.4 0.5 1 23 690 712 690 712 0.98 18 18 0.13 19 7.2 3.0 1 23 718 741 718 741 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAATCAAAGAACAAAGAGTAGATCCCACCCTTCTTCTCCCAGAAGAGCCAATGACTTATGAaattaagaagaaaaaaaagaagaaacgaAAACATCAAGAAGATCCTTTCAAAGACATACAAGATGTTAGTGTGAAGCCTCCAGTTATAATAGAAAAGATGCCTGAGTCTTCTATTGATCCAGAAATTAGCATAAAAGTGGAGAATATAGAAGTGGAGTTAGACTTTAATGAGTTTGTCAACGACAATGGACTGATGCTCGAATGTCCGCAAAGTGAGGACAGCCAAGAACCAGCCATCTCTATAGACgcacaaaaaaaaaccaatcacGAGGCAGCGATTCTTACGTTAGAAAACATTATCAGCAAAAAACGAACGAAAACCGAACAAAATCAGATTTACACATGCAGCATATGTCATTTGGTATTCAAATCTCCGCGCACGCTCAAATTACATCAACGAAATAAGCACAAACTACATAAgaaatcatttaaatatatctgTGATGACTGCGGAATGTCGTATGAACAAAAAACGAGTTTACTCACCCACTATAAAAGGAAACACGGTGCTAATTCACAGCCAGAAGATAAAGATGAAAAGGTCTGCGATATATGCACTCTAGTCTTCAAAGGCGCAATGCGATTAAGAATGCATATGCAAAGAAAACATAATTCTTTCACCGAATCCTTTCAACACCAATGTAGTGATTGTGGACTTACTTACGATAAGCATTCGAGTTTGATAGCGCATCGGAAAAGAAAGCATTTGAATACTGTTAAAAGGGTAGAATTGTTTAATTGCCCTTTGTGCCCTAAAACATATACAAGCCGAGACACTTATGTGAGGCATATCCAAAGAAGTCATAATGCTGAGAAGAATATTAAAGTGCCAACTGAATTACTTCCTAACTTAGAGGAAGTAAACGAAACGGGCGAAGTTCCTTGCAAGCAATGTCCGTTAGTGTTTTCTAGTTTAATGTACTTAAAATTGCATATGCGAAGAAAGCATAATGCTTACATAGATGAATATAAGTTAAAATGCAATATATGTAATATGTCTTATGACAAAATTGAAAGCCTAAAACGGCATATTCGAAGAAAACATTCCTCTTTAGTTTATTGTGATATATGTCATAAGGAGTTTAAAAGTAATGAAGAGTATATTAATCATAAACATGATACAAAGATATTGGAGTGTCAGACATGTGGACTAATATTTGCATCGCAGGGTGGTCTGAAAAAACATATGCGATTTACGCACAAAATCGATTTCGGTCCAAAAACGGCGGTATGCCATTTGTGCAATGAAGGCTTTTATGAAACTAAGCAATTGAAGCATCATTTAGTCAGAAAACATATGAACGTAATGTATCCGTGTAAATTCTGCAGTAAGACATTTAAAACTAAAGAAAGTTTCCGCAGGCATTCATTAAAATTTCACCCTGAAAACTTTTCTCTAGACAGTAACAGACATCAGTGCGATTTGTGTCCAGAAGTTTTCCCTAATGAAATAGAATTATGCAAACATATACAAATATCGCATAGTAAATCTCCACCCATTAAAACCGAAGTAGAAAACGTAGTAATTAAGAAAGAGACAAATGAAGATGATCAAAAACCTACTTTACAATGTACAAAATGCTCAGATTCTTGCGATAGTTTTGAGAGTTTAAGAAAACACTATGAATTATACCATCAAGTAGTACACAAAGTACAATGCCAGTGCTGTGGAGAATTCATAGCTGAACAAGATTTAGAAAAACACACAAAGTCAGCTCATCCAATATTAGTTGATTTAAAATGTTCCCACTGCGATTTTGAAACCACTTCAAAAGTAAGTCTTACACAGCACACATTAAGACATAAGGACATATCGACAATAACTTGCGAATTCCCTGGCTGTAAATACAAAACTTATTTCCAAGAATCAATGGATAAGCATAAGCAAAAACATGCAGAATTAGGTGTAAAATTTCAGTGCAGTAAATGTCCATTTCAAACTatgaacaaatatattttaaggtACCACGAAGAGGTACATTTAACTGGGAAAAAGAAGTATAAATGTAAAGATTGTGACTATTCCACGATATTACCAGCAAATTTAGTGCAACATAGATATAAGCATTCAATAGTAAAAAGGTTTAAATGTGAATACTGTCCATTTGCAACTAAGTACAATACCTCTTTAAGGTTTCATGTTAAGAAAAAGCATTGTGATCTTGTCTcgtaa
- Protein Sequence
- MAAIKEQRVDPTLLLPEEPMTYEIKKKKKKKRKHQEDPFKDIQDVSVKPPVIIEKMPESSIDPEISIKVENIEVELDFNEFVNDNGLMLECPQSEDSQEPAISIDAQKKTNHEAAILTLENIISKKRTKTEQNQIYTCSICHLVFKSPRTLKLHQRNKHKLHKKSFKYICDDCGMSYEQKTSLLTHYKRKHGANSQPEDKDEKVCDICTLVFKGAMRLRMHMQRKHNSFTESFQHQCSDCGLTYDKHSSLIAHRKRKHLNTVKRVELFNCPLCPKTYTSRDTYVRHIQRSHNAEKNIKVPTELLPNLEEVNETGEVPCKQCPLVFSSLMYLKLHMRRKHNAYIDEYKLKCNICNMSYDKIESLKRHIRRKHSSLVYCDICHKEFKSNEEYINHKHDTKILECQTCGLIFASQGGLKKHMRFTHKIDFGPKTAVCHLCNEGFYETKQLKHHLVRKHMNVMYPCKFCSKTFKTKESFRRHSLKFHPENFSLDSNRHQCDLCPEVFPNEIELCKHIQISHSKSPPIKTEVENVVIKKETNEDDQKPTLQCTKCSDSCDSFESLRKHYELYHQVVHKVQCQCCGEFIAEQDLEKHTKSAHPILVDLKCSHCDFETTSKVSLTQHTLRHKDISTITCEFPGCKYKTYFQESMDKHKQKHAELGVKFQCSKCPFQTMNKYILRYHEEVHLTGKKKYKCKDCDYSTILPANLVQHRYKHSIVKRFKCEYCPFATKYNTSLRFHVKKKHCDLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -