Bsom009027.2
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755173.1:8100717-8112314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 1.6 10.6 1.3 3 23 578 599 577 599 0.94 2 24 5.9 8.8e+02 2.0 0.7 4 21 940 957 938 958 0.87 3 24 0.018 2.6 9.9 0.4 1 21 966 986 966 987 0.96 4 24 3.5 5.1e+02 2.7 0.4 1 20 1029 1048 1029 1052 0.82 5 24 0.3 44 6.1 0.9 5 21 1065 1081 1063 1082 0.92 6 24 0.061 9 8.2 0.0 3 23 1091 1112 1089 1112 0.93 7 24 0.018 2.6 9.9 0.3 3 23 1132 1153 1130 1153 0.96 8 24 0.0022 0.32 12.8 1.6 1 23 1159 1182 1159 1182 0.95 9 24 0.11 16 7.4 0.0 1 23 1208 1231 1208 1231 0.90 10 24 0.017 2.5 10.0 3.4 1 23 1236 1258 1236 1258 0.97 11 24 0.061 9.1 8.2 0.4 1 23 1264 1287 1264 1287 0.96 12 24 0.00032 0.047 15.4 1.3 1 23 1300 1322 1300 1322 0.98 13 24 0.00017 0.025 16.3 1.8 1 23 1373 1396 1373 1396 0.97 14 24 0.0009 0.13 14.0 2.7 1 23 1463 1486 1463 1486 0.97 15 24 0.0025 0.37 12.6 3.9 3 23 1517 1538 1515 1538 0.94 16 24 0.51 75 5.4 0.0 3 23 1545 1566 1544 1566 0.95 17 24 0.0088 1.3 10.9 0.2 1 21 1608 1628 1608 1629 0.95 18 24 0.0043 0.63 11.9 0.7 1 23 1639 1661 1639 1661 0.93 19 24 7.8e-05 0.012 17.3 0.3 2 23 1746 1768 1746 1768 0.93 20 24 2.9e-07 4.3e-05 25.0 1.4 3 23 1775 1795 1774 1795 0.98 21 24 0.084 12 7.8 0.1 3 23 1815 1836 1813 1836 0.95 22 24 0.19 28 6.7 0.0 1 23 1858 1880 1858 1880 0.97 23 24 2.3e-05 0.0035 19.0 1.4 1 23 1886 1909 1886 1909 0.97 24 24 0.00023 0.034 15.9 0.4 1 23 1918 1941 1918 1941 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCAATATTTTCTGCCACCAGTGAGGAGGGCATGGAACCCTCCGTCCTCGCTTCGAAAATCAAAGATTGTGTCTCTGTTGAGGTAAATGAAAATGATGAGTTGCCGACATGCGTCTGCCGAAAGTGTTCTGACAATGTAAACAACTGGCACATATTTAAAAACGTATGTGAAAGGAGTCAAAACAAACTACAATCTCTACTAAAAAAAGATGGCAACCAACTAGAAGAGGTTAAAGTAAAAAGTGAGCCATTGACTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGATCTTATCCTGAATCTGAACAGaACTCTACATCTTCCAACAAAATCCAACCTGAAGGACCTCCCATCTTAGCTTCACTGGGGCTTACACCGAGGAGTGATAAGAAATATGTGGATCCTCGCATGGATTGGCAACGAGTACATGCTATTTTGGACACTGTACAAGATGATGAGACAATCAATTCACTTCAAGCAATTGAGGAAATGGATATGGTGCATAATTCAGATCACGATTCTGACACTGAAGTAGAGCTCCTATCAGATATTGATGATTGTTTTGTTGAATGTAAGAAGGGATATTATTCTAAATCAAAAATTATATTGTCAAAAGAACCAAAGGTATCCCGATCAGAATTAGACAAGAAGAGCAAGGAAATAGTAATGTTAAAAAAGCTAAGAAAAACAGATGTGAAACATTGCCCTAAACCACATCATGCTTGGCAACTATTGTTTACTGATGACATCCTTGAATTGATTGTAGAGTCcactaatgaaaatattaaggcaTGCTGTGATAATTCAGCTAAAGGAACAAgtgttggtgaaataaaggctttAATTGGAATTCTTTATTTTCATGGACTCATAAGAGCAACACTTCCAGCTAGGTATGATTTATGGAATGATAAATTTGGTGTATCAAGTGTAAGGGACACAATGAGTTACAAGAGGTTTATCTTTTTATTGcaatatatttcatttgaaaAATCTGAAGATGCTCAGTTGATGCAGTATGATAGTATGAAAAGAATGAGAAAAGTATTTGAAATTTTTGCTATGAATTGTCGTACATCCTATGAAATTGAGAATTTAGCTGTAATTGATGAAGTGATCATTCCAGTCTATGGACCTTGTCCTTTTCGCTATGAAATTGACAGAAAACCACTTAAACGTGGTATTAAAATGGTTCTCCTAGTAGATCCCAgtaacttttttattaataacttagATGTGATTACTGATACATATTTTGGTCCAAGTGAAATAGTGAAGAAGCTTGTACAGCATATGACTGGTTCAGGTAGAACTGTGATTATGGACAACTGGTTTACTTCATTATCATTAATAGAATGTCTTAAAAAAGAATACCAGTTGTTTAGTCTAGCAGCACTGAATCCAACAGATGATATTTTGCCtccattatttttatcaaaacatCGTCAACCCCATACTTTTTGCACTGCATTCATCAATGAGGACACAGCGCTAGTTTCTTATggTGTGGAGAGTGACAAAGATGATGAAGGAGAAGAAGAGGAGGATGAGGAAGAGATGGAGGAAGAAGATGAAGGACAGCAGCCAAGCCACGTTGTTCCACATATGCCTGAAGTGTCGATAACAGTTGTTTCTCGAAAAGGAATACAGCAACTTGCATCTAAAAACTGCCTTGTTTGTGGACGCACATACAGATACTCTCATAATGCAAGACGGCATGAACTCTCCGCGCATAGTTTTGATAGATACACAAACAAAGTAACTCCCAAAAATACTAACATTAATAACACTATAATGCAACCAAAATTAAGACCCAATCCTTTCAATCCAAAAGCGCGACTTATGCCTAACCCAAATAATCACAAAATGCAGTTTTTACCAAAACCTATTTTGCCATTGTCAGCTTCTGTTAAAATGCAACCAAATAGAATAATTACAAAGCCAATTCAAATTAAGCCTGCTCAAAAGGGACCAAATCAATTACCCTATCCACTTCGTATAAGGGCCCTAAAAGATTTGCAAATCAGGAAAAAAGAGCCACAGATACTTAAGACTTTACTTACAACAAAACCGGAAGTTCTAGTTTCTGAACCAGAGATTCTTAACTCAGGACCAGAAAGCCCGGAAACACTTATATCTGAACCAGAGATTGCTTCTTTTCAAGTTGAAGCTATTCTTTCAGAACCAGATGTTTATGACCAACAGGGAGATGAAGTTGATGACCAAAACCAAAACCATAATTCATATAACACTGTTGATATGGAATCAGATAATGAAATAGAAATGGCTCAACAAGAAGACCCCATGAGTGAGACTGACAAACAGGCTGATCATCTCACTGAAAATAATGGTGACGACAGTCAATACGACAATTCGGAAGAACAGGCTGAGGGTAATGCAGAAGATTATGCAGGTGTAGAAACAAAAGAAGgtgaaaataaagttattgaaaATGGTGAAGGCGAAAATGATTACCAAGATGGTAATCCTGAAGAAAATGATGAAGATATGGACGACGATGAGGATATGCCACCAATGGCTCCGGTCGTTGAAATAAATGAAGATGTGTTAAACAATTCTGTCGATAATAGCGCAAAGATTGATGAAGAGGAAGAGGCGGACGAAACTTTAGAGAATGAGGGTACTGAAGCAGTTGAAGAATTAGACCCAAATAAAGTTTATGTGactaaatctcaaaaagaatttatttcaaagtatcgAAATGTTATAGAGCAAATAAATACGAAACGTTGCCTCTGTTGTGATAAGGAATATCCACGAAGAAAAGCAGTTATACAACATTTACAGAAAAATGGGCAAAAGGTACCTAAACATACTTGTTACAATTGTGTTGTCACTTTCACTCATTTAGGTGCACTACTCAGTCATATGAGAGCTGATGTTTGTACAAACTTGTGGAAAGTGATTTATAATGAGGAGGGTATTACAGAGGATATGGTAATAGAGGATGAGCCAAAAGACGTGAAACAACCACATAAAGATTTATTCAATGCACGATCTTATGCCTGCAAGTTGTGCCCTATGAAGTTTCAACTTAAACAATTTATTACTAAGCATGTAGTTGATGTGCATGAAAGTGGACAAACTAAAGTGCCTCTCGGATGTATTCATTGTGGATCACGTTTTAAAGATAAAGGTTTATGGAAAAAACATGTTCGCAATGGAGAGTGTACAGTTTGCATAGCTTGTGATTTGTGTCCAGAGAAATTTGCTAATGTGCAAGCATTCAACAATCATATACTAGCTGTTCATGTTGGTACAGTTGAAGCAGAAAATTATTCGAAAACCATTGATGGTAGACCAACTGACTGCCCATTATGTGACAAGAAAATGGGCTCTTATCAAAATTTAGTTAAGCATCTGAGAATATACCATAATGAAGAGAAACCACACTATTGTCAGAACTGTGATGAAAAGTTTGAAAAAACTGACGACCTCAATAATCACATTTATATGGAACATACTGATAGATCAGCAATGACAGTAAAATCAGAAGTAGATACATCTATTGTTAAAGAAGAAGCTGAAGAATACCATTATTCTTGCACAGAATGCAATGCAATATTTGAGACTGTTGATGCTTGGACGGATCACCAAGTTGCAGAACATAATCAAGTGGCTCACCACTGTGATCAATGCGAGAAAAAGTTCCTCAGACCTTCAGAACTAGCAGAACACAAAAACACTCACTTAAGAGTCAAATTATATCGCTGTAATCTTTGCTCAGACTCATACTCAACTCCTCAGAAATTATCAGATCATGTACAGCAAGTCCATGCGGGTGCTGGGGGCTTTGCCAACAATGATAATGAATTTTACTGTGAGATATGTGTCCGTCAATTCAAGAGTCGCCAAGCTTACTCCAATCATATGCGCATTCATGCTAAAGTTCCCACAACAAATAGAAAGCCTGGGGATACATCGAAAACATTTTCGCCTCAAATTATTGGCAAACCTATTAAAGCATTGCACGCTATGAATGCTACTAACAATCTTCCGTTTACAACAAATCTTAATGTTCCTAATGCTCCATATTCATGTGATATCTGTGGAaaaggtttcatgcacaaaaagAATATATGGAAACACAAGAAAATACTACATTCAGACTTAGTAGATGATAGAAATGACAGTGAAGAAAATACCATGCAGGGTTCCACAGAAGACGATGAATATAATGTTGATGAAAATGGTGCTGTATTATCTACTCCTCAATTCGATAGTTTCAATTTTTCGAGCTACACTAGCCCTGCGCCCCAGCCAGTTCTACCTAAAATCATAACGCCTCCAGCCCCAACATCATTTTCTTGTGATCTATGTTATAAGAAATTCCCTCTTAAAACAAATCTGTGGAAGCATAAAAGATCAAAACATGGCATTATTAACGCCAGTACGGTTGGCCCCCCAGAAACTCAGTCTCAACAGGCCTATTCGTCATCTGCCGGGGAAGGTGGCCGATCTTGTTGCACCATTTGCAATATAAGCTTTTCCGATAAAAAGTCATACTACAGACATAGGAAAAATGTTCATAAATCAACATCACAGGCGTGTAAGATTTGTGGCATTCCTCTCAATTCTACGTTGGAGCTATATGAACATTTGCGAGCAGCTCACTCTCGTGAATTACTTGGTTTTGATGCCAATCAAGGATCTAATAAACCTCATGAAAATCATGAAGAAGCGGAATATGAAGCTGACCAGGAAACGGCTGATCCTAGTGCTGAGTACCAAGCAAGATATCCATGTGATACTTGTGGAAAACAATTTGTGGGTTTACTTGCGTTACAAAATCACCAATGCATCAACCAAACATCATCGCAACCACCATCCTTTGATTGTGAAATTTGCCACAAGAGCTATTATTCAATTGCAGCATTAAAAAGTCACCGAGGCTGGCACTTGCGATCACCGGATGGCAAAGCAGCTGCCAATAACAGTGGTTTATGGATGCCACAGCATAAAGTAACCAGCAAACACAGCAAAAGTGAAATAGTTGATGCAATACAACTAGCAAAAGTGACGCACTCTACTCCGGTAGCAGTGGCCAAACGAAGACTACCACCGGAAGTAGAGGTAACCGTAGTGAACCCAAATAAAAAAATGCGTTCCGACGAATCAGAACTGGACCACTCAGGTAGTATAGAAGATCGGTACTGTAATATTTGTGACAAAGAGTTCACGAAACGCGCTGCTTACCAAAGACACATGGACGAAGTGCACATGCCTAATTCTGTGTTTTGTCCTGTTTGTGATAAAAGTTTTACGAGGAAGTCGACATTACTCGTGCACATGAAGAAGCACTACGAAGGAGGGGAGGGAAGTTCTACTGGTGTGGTCCAAGAGGAGATCGGTTTTGGTTGTGAAATTTGTGGAGTTTCATGTCCAAGTTCAGTGGCGCTTTCTATTCATAAAGCAAAGGAACATGCAGAGGATAGTGGGGAATCTGAAGATGAGGGCATTCCTAATGATCCTCCTCCTCCTGGAGAGTTTACTTGTGGGCAGTGCGGCGATGGAGTAGCTACCCCGAGAGCATTAATAGCTCATCGAACAATGCATGCCACTCCTAGCAAGTTCTACTGCAGTGTTTGCAAGGTTTACTTCTCCCGGTCATCAGAGTTGGCGACTCACATGCGCTCTAGACACTCTGAAGCTGGTGAAAAGTCTTTCTACCCTTGTGCTATGTGCGACCGGTTTTATATGAATAAGAAGAGTTTACAGAAACATATTGAAATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFSATSEEGMEPSVLASKIKDCVSVEVNENDELPTCVCRKCSDNVNNWHIFKNVCERSQNKLQSLLKKDGNQLEEVKVKSEPLTDEAYDDGVVIDGSYPESEQNSTSSNKIQPEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDTVQDDETINSLQAIEEMDMVHNSDHDSDTEVELLSDIDDCFVECKKGYYSKSKIILSKEPKVSRSELDKKSKEIVMLKKLRKTDVKHCPKPHHAWQLLFTDDILELIVESTNENIKACCDNSAKGTSVGEIKALIGILYFHGLIRATLPARYDLWNDKFGVSSVRDTMSYKRFIFLLQYISFEKSEDAQLMQYDSMKRMRKVFEIFAMNCRTSYEIENLAVIDEVIIPVYGPCPFRYEIDRKPLKRGIKMVLLVDPSNFFINNLDVITDTYFGPSEIVKKLVQHMTGSGRTVIMDNWFTSLSLIECLKKEYQLFSLAALNPTDDILPPLFLSKHRQPHTFCTAFINEDTALVSYGVESDKDDEGEEEEDEEEMEEEDEGQQPSHVVPHMPEVSITVVSRKGIQQLASKNCLVCGRTYRYSHNARRHELSAHSFDRYTNKVTPKNTNINNTIMQPKLRPNPFNPKARLMPNPNNHKMQFLPKPILPLSASVKMQPNRIITKPIQIKPAQKGPNQLPYPLRIRALKDLQIRKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDVYDQQGDEVDDQNQNHNSYNTVDMESDNEIEMAQQEDPMSETDKQADHLTENNGDDSQYDNSEEQAEGNAEDYAGVETKEGENKVIENGEGENDYQDGNPEENDEDMDDDEDMPPMAPVVEINEDVLNNSVDNSAKIDEEEEADETLENEGTEAVEELDPNKVYVTKSQKEFISKYRNVIEQINTKRCLCCDKEYPRRKAVIQHLQKNGQKVPKHTCYNCVVTFTHLGALLSHMRADVCTNLWKVIYNEEGITEDMVIEDEPKDVKQPHKDLFNARSYACKLCPMKFQLKQFITKHVVDVHESGQTKVPLGCIHCGSRFKDKGLWKKHVRNGECTVCIACDLCPEKFANVQAFNNHILAVHVGTVEAENYSKTIDGRPTDCPLCDKKMGSYQNLVKHLRIYHNEEKPHYCQNCDEKFEKTDDLNNHIYMEHTDRSAMTVKSEVDTSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKLYRCNLCSDSYSTPQKLSDHVQQVHAGAGGFANNDNEFYCEICVRQFKSRQAYSNHMRIHAKVPTTNRKPGDTSKTFSPQIIGKPIKALHAMNATNNLPFTTNLNVPNAPYSCDICGKGFMHKKNIWKHKKILHSDLVDDRNDSEENTMQGSTEDDEYNVDENGAVLSTPQFDSFNFSSYTSPAPQPVLPKIITPPAPTSFSCDLCYKKFPLKTNLWKHKRSKHGIINASTVGPPETQSQQAYSSSAGEGGRSCCTICNISFSDKKSYYRHRKNVHKSTSQACKICGIPLNSTLELYEHLRAAHSRELLGFDANQGSNKPHENHEEAEYEADQETADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTSSQPPSFDCEICHKSYYSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKHSKSEIVDAIQLAKVTHSTPVAVAKRRLPPEVEVTVVNPNKKMRSDESELDHSGSIEDRYCNICDKEFTKRAAYQRHMDEVHMPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSTGVVQEEIGFGCEICGVSCPSSVALSIHKAKEHAEDSGESEDEGIPNDPPPPGEFTCGQCGDGVATPRALIAHRTMHATPSKFYCSVCKVYFSRSSELATHMRSRHSEAGEKSFYPCAMCDRFYMNKKSLQKHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -