Bsom039743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bedellia somnulentella
Gene Symbol
-
Assembly
GCA_963576735.1
Location
OY755198.1:10466006-10469045[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 9.7e-06 0.0014 20.2 5.2 1 23 7 30 7 30 0.97
2 19 9.7e-05 0.014 17.0 0.0 3 23 37 58 35 58 0.96
3 19 8e-06 0.0012 20.5 0.3 2 23 67 89 67 89 0.97
4 19 1.5e-05 0.0022 19.6 4.0 2 23 96 118 95 118 0.92
5 19 9.3e-06 0.0014 20.3 1.7 2 23 126 148 125 148 0.96
6 19 2.9e-06 0.00042 21.9 3.0 2 23 156 178 155 178 0.96
7 19 0.0014 0.2 13.4 3.7 1 20 184 203 184 207 0.94
8 19 0.00021 0.031 16.0 0.9 2 23 217 239 216 239 0.96
9 19 0.0014 0.2 13.4 1.8 1 23 264 287 264 287 0.97
10 19 0.0068 1 11.2 1.8 3 23 325 346 324 346 0.97
11 19 0.0013 0.19 13.5 5.0 1 23 364 387 364 387 0.97
12 19 9.3e-06 0.0014 20.3 1.0 2 23 394 416 393 416 0.96
13 19 0.00014 0.02 16.6 2.5 2 23 423 445 422 445 0.94
14 19 0.00023 0.034 15.9 2.2 1 23 451 474 451 474 0.98
15 19 0.099 15 7.6 5.0 2 23 482 504 482 504 0.95
16 19 7.7e-05 0.011 17.4 2.0 1 23 511 534 511 534 0.97
17 19 0.22 32 6.5 2.7 1 22 541 562 541 564 0.88
18 19 0.00026 0.038 15.7 2.8 2 23 577 599 577 599 0.96
19 19 0.22 33 6.5 0.5 3 17 621 635 620 636 0.92

Sequence Information

Coding Sequence
ATGTCAACAACACAAGATTACGTGTGTGACTACTGCTTCCGCACGTTTACCCGAAAATACAATTTGAGGATGCATATACAGAACTGCCACATACACTCGGAAACTATCTGTGAGGTGTGCGATAGGATTTTTACTAGACCTGCTGCCTTGGTTTTGCATTTGCAGAGAGGACATAATAGAAACGGCGAAGGTTATCCAGAGTGTGATATCTGCGGTCGAATATTCCGAAGAAAACAGAACATTGTTTCTCACATGAACACAATACACTTACAACTGTTTGACATAACTTGTGACATATGTCAGAAATCATTCACGACACGACGCAACTTAAAACGACATAAACACCAGCTTCACAATCGATCGTTCCCATATCTCGAATGTGATAAATGCAATAAGGTCTTCAAAGGAAAACACTCGCTAATATCACACATACAAACTTCGCACACACACACCAAACAAGAATCTAAATGTCATCTATGCGATAAAATTTACACGAATAATAGGAATTTGAAAAGGCATATGGAAAGTTTGCATGGGGATAGGGAGGAATTCAAATGTAGCGTTTGTCCCAAGATCTATAATTCAAATCAGAGTTTGAAGAGACACGAGAAATGTCGACATGGTTATAAAAGTGGTGGTATCTTAATATCTTGTGGAGACTGCGATAGAACATTTCATAAGGAAGTGTTGTTGCGACAACATATCAAAATGGAACATTCATTCCAGTCATTTTACAGTTATTGTAAAGAACAGCTTCTGAAATCAGATTCTAAGGAAAAACGATTGCTTTACAACTGTGAATTATGTCAACACACATATAATAATGTCTACGATTTAAAAGACCATCTAAAATCAATACACGATGtagaatataattattgttCTTGCAATGTTTGCTTTGCTAAGTTTTACTGCAAAGAAACTTTACTCAAACACAAATCCAGTTGTAATATCCCAGAAAATGTAAATTTTTGCCAACACTGTGATAAACTATTCACAGACATATCTAGTTTAGAATTCCATATCCGCATCTTTCATCCGCAAGCGAAAGTGCCAGATTCTAATGTGACATCTTCGACAAATGACATATATCGATGCCATATATGCGAACGGGTCTATTACAGCGATAGATCTTTAAAACATCACATAAAACTTAAACATACGTCCGAAGACGCTGTAGAATGTGAAACTTGCGGAAAAATCTGTAGTAACAAATACTATTTAATGTCACACATGAAAATCGTTCACGCCGAGACAGATCTGTCAAAATGTGACTTCTGCGACAAGCAATTCAAATCTAAAAGGAATATTCGGAGACATATTGAGTACACTCATTTAGGAATGCAGCGGTATAAATGTGTTGAGTGTGAAACGTTGTTTAAAGAGAAACGCAGTCTTCGGAAACATGTCAGAACGAAACACGCGGACTCGAATGCGTTTCCGCAATGCCACATATGTCAGAAACGTTTCGAATCTGCCAAATCTTGTAAGCTTCATTTGAAATTGGTTCACTCGTTCAATATGAACACCCATCCTTGTAATACATGCTCCATGTCTTTTACAAGCTATGAATCTCTTAAAGTTCATTTACAAACGAATCACGCGGCAGAAAATCAAATATTTAAGTGTGAAGAATGCAACTTAGTTTTTCAAGGGCAAGAGAAGTTTGATAAACACAATAGTTTGTGCCATGTTTATTCTAACACTTTAAAACAAAAGCTTTTGCCTCGCTGTGTGTTGTGTGTCAAAGATTTCAGTACGAAGAAAACTTTGAAGCGTCACATTAAGAAGTTTCATTTAGATTTTGATCCCGATGAATTAGCTATATTCGgtactaaaaataaaactttcgaAGTCGATTGCGATAAATGTTTAAAGGTATTCAATGATAaccattatttaaatacatacaacaAACTAAAAGACGATAGGGACTCGGTCGTATTTCAATGTACCACATGTCTAAACTCCTATACACCGTTACAATATTCTATCCAAATGTACAAAAGTTCGATGGACATGTTTCGAGCGACGAATAAGAATGAAACGGTGATGAGTGACCTGTGTACAGCGGTGATGAGTGATGAAGAGTTTGATCTGGCGAAGGTGAAGAAGGAAGCTGATGAAGAGATGATGATGCCGGAAAGTACGACGCAGACTGATGTAAAACAGGAAGTGGAAGAAATTAAAGTTGAGCCTGATTTACcttaa
Protein Sequence
MSTTQDYVCDYCFRTFTRKYNLRMHIQNCHIHSETICEVCDRIFTRPAALVLHLQRGHNRNGEGYPECDICGRIFRRKQNIVSHMNTIHLQLFDITCDICQKSFTTRRNLKRHKHQLHNRSFPYLECDKCNKVFKGKHSLISHIQTSHTHTKQESKCHLCDKIYTNNRNLKRHMESLHGDREEFKCSVCPKIYNSNQSLKRHEKCRHGYKSGGILISCGDCDRTFHKEVLLRQHIKMEHSFQSFYSYCKEQLLKSDSKEKRLLYNCELCQHTYNNVYDLKDHLKSIHDVEYNYCSCNVCFAKFYCKETLLKHKSSCNIPENVNFCQHCDKLFTDISSLEFHIRIFHPQAKVPDSNVTSSTNDIYRCHICERVYYSDRSLKHHIKLKHTSEDAVECETCGKICSNKYYLMSHMKIVHAETDLSKCDFCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHADSNAFPQCHICQKRFESAKSCKLHLKLVHSFNMNTHPCNTCSMSFTSYESLKVHLQTNHAAENQIFKCEECNLVFQGQEKFDKHNSLCHVYSNTLKQKLLPRCVLCVKDFSTKKTLKRHIKKFHLDFDPDELAIFGTKNKTFEVDCDKCLKVFNDNHYLNTYNKLKDDRDSVVFQCTTCLNSYTPLQYSIQMYKSSMDMFRATNKNETVMSDLCTAVMSDEEFDLAKVKKEADEEMMMPESTTQTDVKQEVEEIKVEPDLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-