Basic Information

Insect: Bedellia somnulentella
Gene Symbol: -
Assembly: GCA_963576735.1
Location: OY755178.1:14885924-14902432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.8e-05 0.01 17.5 2.2 1 23 423 445 423 445 0.97

2 18 0.0035 0.52 12.1 0.6 1 20 451 470 451 473 0.94

3 18 3.7e-05 0.0054 18.4 5.2 1 23 493 515 493 515 0.98

4 18 3.1e-05 0.0046 18.6 4.6 1 23 521 543 521 543 0.99

5 18 3.1e-05 0.0046 18.6 5.3 1 23 549 571 549 571 0.97

6 18 2.3e-06 0.00034 22.1 5.5 1 23 577 599 577 599 0.98

7 18 3.1e-06 0.00045 21.8 3.3 1 23 605 627 605 627 0.97

8 18 8.6e-05 0.013 17.2 6.7 1 23 633 655 633 655 0.97

9 18 8.5e-05 0.013 17.2 6.5 1 23 661 683 661 683 0.97

10 18 4.1e-07 6.1e-05 24.5 1.9 1 23 689 711 689 711 0.98

11 18 8.2e-06 0.0012 20.4 7.7 1 23 717 739 717 739 0.98

12 18 2.1e-05 0.0031 19.1 6.4 1 23 745 767 745 767 0.98

13 18 3.7e-05 0.0055 18.4 6.9 1 23 773 795 773 795 0.97

14 18 8e-07 0.00012 23.6 6.0 1 23 801 823 801 823 0.98

15 18 4.8e-05 0.007 18.0 7.7 1 23 829 851 829 851 0.97

16 18 2.6e-05 0.0038 18.9 4.0 1 23 857 879 857 879 0.96

17 18 0.00039 0.058 15.1 0.6 1 23 886 908 886 908 0.97

18 18 0.0053 0.79 11.6 5.0 1 23 918 940 918 940 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.8e-05	0.01	17.5	2.2	1	23	423	445	423	445	0.97
2	18	0.0035	0.52	12.1	0.6	1	20	451	470	451	473	0.94
3	18	3.7e-05	0.0054	18.4	5.2	1	23	493	515	493	515	0.98
4	18	3.1e-05	0.0046	18.6	4.6	1	23	521	543	521	543	0.99
5	18	3.1e-05	0.0046	18.6	5.3	1	23	549	571	549	571	0.97
6	18	2.3e-06	0.00034	22.1	5.5	1	23	577	599	577	599	0.98
7	18	3.1e-06	0.00045	21.8	3.3	1	23	605	627	605	627	0.97
8	18	8.6e-05	0.013	17.2	6.7	1	23	633	655	633	655	0.97
9	18	8.5e-05	0.013	17.2	6.5	1	23	661	683	661	683	0.97
10	18	4.1e-07	6.1e-05	24.5	1.9	1	23	689	711	689	711	0.98
11	18	8.2e-06	0.0012	20.4	7.7	1	23	717	739	717	739	0.98
12	18	2.1e-05	0.0031	19.1	6.4	1	23	745	767	745	767	0.98
13	18	3.7e-05	0.0055	18.4	6.9	1	23	773	795	773	795	0.97
14	18	8e-07	0.00012	23.6	6.0	1	23	801	823	801	823	0.98
15	18	4.8e-05	0.007	18.0	7.7	1	23	829	851	829	851	0.97
16	18	2.6e-05	0.0038	18.9	4.0	1	23	857	879	857	879	0.96
17	18	0.00039	0.058	15.1	0.6	1	23	886	908	886	908	0.97
18	18	0.0053	0.79	11.6	5.0	1	23	918	940	918	940	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACATCATAATATGAATACGGGTGGTGGCCAGGCTACAGTCAATGCTGAGTCACAGAATCAAAGAGGGCAATCTTCACAACAACAGCAATCAACTGCTTTAACACCCACGACCTCAGCTACAGATCTTAGAGTGAATTCTGCCGCTGTAAACGTCGCATTGTCTAGCGTTGCTAAGTACTGGGTATTTACTAATTTGTTCCCTGGACCGATACCACAAGTTTCTGTATATGGGCTACCGACAGGAACAAGAATTGAAAATGGCAAACCTGTACAGGATGCATTAGGACAAAGTATATTAAATGGTGACCCTAATATAATTTTGGGTCATCACAGTGGAGGGCAATCACAAGTAACAGTTTCAGGTGCTAATGGACAGCAGATACCAGTCACTCAAATTATTGCTGCTCAACCAGGACAAGCTCATGAAGCACTGGTAGCCCATAGCCAAGATCTACAAAATCAACAAGGCAGCAATAATGTCCAGGTTGCCGTCAGTAGCGGCCAAACCCATCAGGTATCAAATAACCGGGTGGAGTTTGTACAACATCATAACATAGATATGGTAAATCAAATGGGCCACCATTCTCAGCAACATATAACTCAGCAGCAGTTTTTGACAACAAGACCTGACCACAGCAATCAACAGattCAATTAACAGTAAGCGAAGATGGTATCGTTACTGTGGTGGAGCCTGGGGGTGGTAAAATGGTTGATAAGGATGAACTGCATGATGCAATCAAGATGCCAAACGACCACACCCTCACTGTACATCAACTTCAACAGATCGTGGGGCAACAGGTGATAGACAGTGTTGTTCGAATAGAACAAGCCACAGGGGAACCAGCCAACATTCTAGTTACTCACAATGCAGATGGGACAACTTCTATCGAAGCTAGTGCAGCTGATCCCCTCATTGTCAAAGACGAGAAGAACTCGGGCAAGATTGAGACAGCTCAGTTTGCAATACCTGATATTAAAGACCTTAAGGGTGCTATCGATTTAAAGAGTGTAAGTGCAATGGGGATGGAAACTGCCGTGGTGAAAATTTCAGGTGGTACAAATGAAAATGATATGCACGCCATGTACAAAGTAAACGTTGAGGATTTGTCACAGCTGCTAGCATATCATGAGGTCTTTGGTAAAATCCCAACTGAAGGACAAGCTCAACCCAAGCAACAACAACTGGTGGAGATCGAAGTAGAAGCACCAGGTGCCAGTACAAGCGTAGCAGAGACAGAATCATCACCAGGTCATCATTCCTGCGATATCTGCGGCAAGATATTCCAGTTTCGATACCAACTTATCGTGCACAGACGATACCATGGGGAAAGAAAACCGTTCACTTGTCAGGTCTGCGGGTCTGCTTTTGCGAACCCTGTTGAATTGTCAAGGCATGGGAAATGTCATGTTGCTGGTGCATCAGAAGCCGAACGCAACCCAAAGCGATTGGCCCCAGACAAGCCTTACGCCTGCACCACTTGCCACAAAACATTTGCCAGAAAAGAACATCTCTACAACCATGCCCGAAGCCATACTGGCGAAACTCCTTACAGATGTCAGTACTGCGCTAAAACGTTCACCCGTAAAGAGCACATGGTGAACCACGTTCGTAAGCACACGGGCGAGACTCCGCATCGATGTGATATCTGCAAGAAGAGCTTCACCAGGAAGGAACATTTTATGAACCATGTTATGTGGCACACAGGTGAAACGCCCCACCAATGCCAATTGTGCGGGAAGAAGTACACTAGGAAGGAACATTTAGTGAACCATATGCGCTCCCACACCAATGACTCCCCGTTCAAATGTGATCTATGTGATAAGTCATTCACGAGAAAGGAACATTTCAGCAATCACATACTGTGGCATACTGGTGAAACCCCACATCGTTGCGACTTCTGTTCGAAAACGTTCACGCGAAAAGAACACCTGCTGAACCACGTCCGCCAGCACACGGGCGAGTCCCCGCACCGATGCAACTTCTGTTCAAAGTCGTTCACGCGACGTGAACATCTCGTGAACCATGTGAGACAACACACGGGGGAGACTCCGTTCCAGTGTGGATATTGTCCTAAGGCGTTCACGAGGAAGGATCATTTAGTAAACCACGTCCGCCAACACACCGGCGAGTCCCCTCATAAATGCTCGTACTGCACTAAGTCGTTCACGCGCAAAGAGCACCTCACGAACCACGTGCGGCAACACACGGGGGAGTCGCCGCATCGCTGTACCTACTGCGCCAAGTCTTTTACTAGGAAGGAGCATCTCAACAATCATGTCAGACAGCACACGGGCGAAACTCCATACAAATGTGCGTATTGCACGAAATCATTCTCTCGCAAGGAACATCTAACGAACCATACTCATCTCCATACGGGAGAGACGCCGCACAAATGTCCATTTTGTACTAAGACTTTCTCCAGGAAGGAGCATCTTACCAATCATATAAGAATACACACAGGAGAATCTCCGCATCGCTGCGAGTTTTGTCAGAAAACGTTCACGAGAAAAGAGCACTTGAACAACCATTTGAAACAGCACACGGGAGATACGCCGCATATGTGTCGAGTGTGCTCTAAGCCTTTTACTAGGAAGGAACATTTACTTTCGCATATGAGAGCGCACAGTTGCGGCGAGCGGCCCTTCAGTTGCGAGCAATGTGGCAAATCATTCCCTTTGAAAGGAAACCTGATGTTCCACGAGCGCTCGCACTATAAGGCTGGAGGGGGAGCCAGGCCTTTCCGCTGCGATATCTGCTCTAAGGACTTCATTTGTAAAGGTCACCTAGTAACCCATCGCCGCACTCACGAGGAAGCTGGTGCCACTACTACTCCCACGGAAGGAGAAGATTGTACAGCGGCTTGCACTAAATGTGAACCTGCTGAAAACGCAGATCCTAATCAAACGCAGGAGGTTATGAAGATTGAGAGAAATTCAACGGAAAGCCGGCCAAATGAAGGCACAATAAACGCACAGGATCAAAGCAACCCAGCTGTCATGCAGATGGCTACACAGCAAATCCGTAACTCAACAAACACAGAAACAGATGGCAGCACCGTCGCCACATACACTCCCGCGCCAACTATATCGCACCACACAGTTACCGTCAACTATTGA
Protein Sequence: MNPEHHNMNTGGGQATVNAESQNQRGQSSQQQQSTALTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDALGQSILNGDPNIILGHHSGGQSQVTVSGANGQQIPVTQIIAAQPGQAHEALVAHSQDLQNQQGSNNVQVAVSSGQTHQVSNNRVEFVQHHNIDMVNQMGHHSQQHITQQQFLTTRPDHSNQQIQLTVSEDGIVTVVEPGGGKMVDKDELHDAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASAADPLIVKDEKNSGKIETAQFAIPDIKDLKGAIDLKSVSAMGMETAVVKISGGTNENDMHAMYKVNVEDLSQLLAYHEVFGKIPTEGQAQPKQQQLVEIEVEAPGASTSVAETESSPGHHSCDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHVAGASEAERNPKRLAPDKPYACTTCHKTFARKEHLYNHARSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQLCGKKYTRKEHLVNHMRSHTNDSPFKCDLCDKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPYKCAYCTKSFSRKEHLTNHTHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLNNHLKQHTGDTPHMCRVCSKPFTRKEHLLSHMRAHSCGERPFSCEQCGKSFPLKGNLMFHERSHYKAGGGARPFRCDICSKDFICKGHLVTHRRTHEEAGATTTPTEGEDCTAACTKCEPAENADPNQTQEVMKIERNSTESRPNEGTINAQDQSNPAVMQMATQQIRNSTNTETDGSTVATYTPAPTISHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -