Bsom022887.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755184.1:7005550-7006920[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-13 2.3e-10 41.3 0.0 2 39 16 53 15 58 0.93 2 2 8.9 1.2e+04 -2.7 0.0 17 23 160 166 159 167 0.87
Sequence Information
- Coding Sequence
- ATGGTTCGTAACTATAAACGAAAAACAGATCGTGGCAAATGGAACGAAGAAGATATGAAAAGAGCAGTAAATGCTGTTCTTACTGATAGCATGGGGTTTATTCGAGCCTCGTCTTCCTACGATGTTCCAAAGTCAACCTTAGAGCGACGAGTAAGAAAAGCTCGTGAAACTGTTAATGCTGACACTGATTCTAATGAAGGCTGCGGGAAAAAACATTTGGGAAGATTCAAAACTGTTTTCACAGCCGAACAAGAAAATGAGCTGGTGGAGTATGTGAAATCTATGGAAGCACGGCTTTTTAGTTTTACAGGAAAAGAGCTTCGTATTATAGCTTATCAGTTGGCTCAGCAAAATCACATAGACAACCCCTTTAACACAGAAACTGGTATGGCAGGAGAAGATTGGCTCAACGGGTTTTTAAAACGACACCCTGATCTAGCATACAGCCGCCCAGAACCAACATTAGCCGCAAGAGCGATGGGTTTTAACAGAGCGGCAGTCGacaaattttttacattgttagAAAATTTAATAGACAAACATAAACTGACCCCTGAAAGGATTTACAATGCAGACGAAACGGGGATTAGTACTGTTCCAAAAAgtcaatcaaaaatattgtcaacGAAGGGCCAGAAGCAAGTTGGCTGCCTCTCATCAGCAGAGAGAGGCCAGTTGGTCACTGCTGAAATTTGTTTTAATGCCGTTGGCACCTATATCCCGCCTATGCTAATATACGCTCGGAAGTGGATGAAAGAAGAACTTTTGGATGATGCTCCGTCTGGGTTTTGGGGCACTTGCAGTGAGAATGGCTGGATtacaacaaacatattttttgatTGGTTTAAATCATTCGTGCAGTTTGCACAACCAACAAAAGAAAAGCCTGTATTACTTCTGTTAGACGGTCACTCTTCacatatcaaaaatattgacCTAATAGACTATGCAAgagaaaataatgtaattttgttATGTACACCACCACACTGCACTCACAAATTGCAGCCTTTAGACGTGTCTTTCATGAACCCTTTAAGCACGTATTACAGTGCAGAAGTGAAAAAATGGCTGAGAGATCACCCTGGTCGCGTGGTCACACCATATCAAGTGGCAAAACTATTTAGACAAGCTTACTTAAAAGCAGCCACAATACTCACAGCCATACATGGATTTCGTAAATGTGGTATATGGCCATTAGATAAATTTGTTTTTACAGATGCTGATTTCATAGCTGCAGAAACGACTAACACAGAAAACCTGGCAAGAAAAGAGCTAAATGTGGAAAATGCTCCATCAACTCAAACATCCGAACCAGCAATTGGACATATCATCTTGGACAAATTTCGTCTGCAACCAAGCAAAATATAG
- Protein Sequence
- MVRNYKRKTDRGKWNEEDMKRAVNAVLTDSMGFIRASSSYDVPKSTLERRVRKARETVNADTDSNEGCGKKHLGRFKTVFTAEQENELVEYVKSMEARLFSFTGKELRIIAYQLAQQNHIDNPFNTETGMAGEDWLNGFLKRHPDLAYSRPEPTLAARAMGFNRAAVDKFFTLLENLIDKHKLTPERIYNADETGISTVPKSQSKILSTKGQKQVGCLSSAERGQLVTAEICFNAVGTYIPPMLIYARKWMKEELLDDAPSGFWGTCSENGWITTNIFFDWFKSFVQFAQPTKEKPVLLLLDGHSSHIKNIDLIDYARENNVILLCTPPHCTHKLQPLDVSFMNPLSTYYSAEVKKWLRDHPGRVVTPYQVAKLFRQAYLKAATILTAIHGFRKCGIWPLDKFVFTDADFIAAETTNTENLARKELNVENAPSTQTSEPAIGHIILDKFRLQPSKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406648;
- 90% Identity
- -
- 80% Identity
- -