Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 9.6e-10 1.4e-06 29.2 0.0 4 38 149 184 149 189 0.88

2 2 1.2e-05 0.016 16.2 0.1 2 28 201 227 200 228 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	9.6e-10	1.4e-06	29.2	0.0	4	38	149	184	149	189	0.88
2	2	1.2e-05	0.016	16.2	0.1	2	28	201	227	200	228	0.93

Coding Sequence: ATGGCAAGGTTATTCCAATCAACAGAAACCTCTAACGTCGACGGTATCGTGGAAACTGTAACTGCGGCTGAAGAAGGCAAGCCTGAAGACGAAACATTCTTGTGCACACGCCCGACATGGACTCGAAGACCATGCGGAGCGACAAAGACGGCTTTGGAATCCTTCTGTCCAGCCGCGCCTGCAGCCATCCCTGTCTCGATGACGTCAGAACCAGTCGATATTCCGCGGACGTTGGAAACACTCGCACCACTAACTCACAGCAGCTCTTCAATCCATCTGGAACAACTTTCCATGCTATCTGAAGATGAACAGTCTTCGGAGTTTATGCCGCTTTTATCAATCAAAGATGAACCCTCTTCTGAAGGAGAAGCTCCAACGACGAGTGGGGATGAAACCAATGAAAGTCAGTCTTCTCGAAGCTCAGGTAAATCGTGGACTGCCATTGATATGGAGAATGCCCTTCAAGCTCTCAGACAACAGGATATGACACTCACTAAGGCTTCTGCAAAGTTTGGGATACCATCCACGACGCTGTGGCAGAGAGCACACCGCGCCGGTATCGATACTCCCAAACGCGAGACGTCGGGGCGAGGCTGGCAACCCAACGCGTTGCGAGATGCGCTGTCTGCTCTACGACAGGGAAAACTTTCTGCTAATAAAGCTAGTAAAGCTTATGAAATCCAGCCAGGAGGATTTCCTTGGGATAAAGACCATAGAGATCATATAAGTGTACATAGTTGTCGAGCCGAGGCGAGTGAACACGTATATAAACAGTCAAACAGTGGCTGCTTCACGTTTGGACAGCGAGGTTTGAGTTATGGACTTGTTCAAGTGAGAATGCGTTTTGATTTTCCATCGTCGTAA
Protein Sequence: MARLFQSTETSNVDGIVETVTAAEEGKPEDETFLCTRPTWTRRPCGATKTALESFCPAAPAAIPVSMTSEPVDIPRTLETLAPLTHSSSSIHLEQLSMLSEDEQSSEFMPLLSIKDEPSSEGEAPTTSGDETNESQSSRSSGKSWTAIDMENALQALRQQDMTLTKASAKFGIPSTTLWQRAHRAGIDTPKRETSGRGWQPNALRDALSALRQGKLSANKASKAYEIQPGGFPWDKDHRDHISVHSCRAEASEHVYKQSNSGCFTFGQRGLSYGLVQVRMRFDFPSS

Sequence clustering based on sequence similarity using MMseqs2