Bsom005390.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- lola
- Assembly
- GCA_963576735.1
- Location
- OY755170.1:24779301-24781938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-16 1.7e-13 51.3 0.0 2 42 329 370 328 373 0.95 2 2 0.77 1.1e+03 0.7 0.0 25 34 438 447 437 447 0.89
Sequence Information
- Coding Sequence
- ATGTCGATCCAGCAGTTCTGCCTCCGATGGAACAACCACCAGCCGAACTTCATCTCCGTGTTCACGACATTACTCAACACGGAGTCACTCGTCGACGTAACCCTGGCAGCTGAAGGCCGATACCTTCAGGCACACAAAGTTGTTTTATCAGCATGTAGTGTTTACTTTCAGACATTGTTCACGGAGAATCCCTCGAGGCATCCCATCGTTATTTTGAAAGATGTGAAATATTCAGACTTAAGGATAATGGTGGACTTCATGTACTATGGAGAAGTTAATGTGTCACAGGAACAATTGCCACAGGTGTTGGAAACGGCCAAGATGTTGAAGATCAAAGGTCTCACCGAGATGCCTGAGTCCACTTCCCTGACGAGGTCTCAAGGGAATACGTCAGAGTTCCTGCCGTCAGAGGGAGCTGATCAGAAACACTATGTTTCACCATCCAGCTCACCGAGCGCAGCGAAAAGGAAAAGGAATCGGAGACCTTCTTTGGGTAATAACAACAACCAAATGTGCACTGGAGATGAACGTTCAATCGAGAATGATCCTTCTGCAGTAGAAATGGAAGGGCCAAGATCAGACTCCATCACACTGAGCAGTTTACCGCAGAGACGACGGGCACAAGACTTCCATCAAGACGATAGAACCGTGGACGCGGGCCAACAGACTGAAGAAGCACAGAATAATGTACATGATGATCCATTGCTGATGGAGACCAACCCTCCCGGTCTGAGCCAAGGAGGGCAGTGGAGTATGATGGAGGGGTATCCGCGATACGGGAACGCGTGTTTGGGCGGCAACCTGCAGCAGGACGGCGGCATGGGCTACATCACCAACGTGATGTCCCAGTACAGCCAGAACGAGTTCGGCAACGGCGTGGGCCCGTCGCCCGGCCCGTCGTGCCTGCCCGAGCAGCCCGCGCCGCCGCCCGACGCCGCCGCCACGCCGCACGTCAAACGACGACGAACCAACAATCCGCAAGCCGAAGAAAACTTCCAGCGCGCCATCGAGGCGGTCCGCTTCGGAGGCATCGGCTTCTGCAAAGCCGCTCGCATGTTCGGCGTCAACAACCGCACGCTGTGGCTCGAGTACAAGAAGCGCGGCTACCCCAACAACCGGCCCAGCATCAAGAACCGCATCAAGCGTGAGCACACGACGCCGCCGCCCGAGCACAAAGAAGACGCGCTCGGCAACGACGCCAACCAGATGGCGCTAGTGTGCCCGCCGCACCCCGTGCCCATGGTCGGCTTCATAGAGTCGCGCGGGATGGACTTCCCTCTGCAGAACGTGACCCACTCGTCTCCTCTCAACCTCCACGGGATAAATTTTAATACGCTGCAATAG
- Protein Sequence
- MSIQQFCLRWNNHQPNFISVFTTLLNTESLVDVTLAAEGRYLQAHKVVLSACSVYFQTLFTENPSRHPIVILKDVKYSDLRIMVDFMYYGEVNVSQEQLPQVLETAKMLKIKGLTEMPESTSLTRSQGNTSEFLPSEGADQKHYVSPSSSPSAAKRKRNRRPSLGNNNNQMCTGDERSIENDPSAVEMEGPRSDSITLSSLPQRRRAQDFHQDDRTVDAGQQTEEAQNNVHDDPLLMETNPPGLSQGGQWSMMEGYPRYGNACLGGNLQQDGGMGYITNVMSQYSQNEFGNGVGPSPGPSCLPEQPAPPPDAAATPHVKRRRTNNPQAEENFQRAIEAVRFGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSIKNRIKREHTTPPPEHKEDALGNDANQMALVCPPHPVPMVGFIESRGMDFPLQNVTHSSPLNLHGINFNTLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00198343;
- 90% Identity
- iTF_00198343;
- 80% Identity
- iTF_00198343;