Bsom002971.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- CAUYWD010000336.1:1-16411[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.051 72 4.5 0.0 28 39 1 12 1 15 0.91 2 3 3.7e-14 5.1e-11 43.4 0.0 3 45 31 74 29 74 0.95 3 3 3.8e-17 5.3e-14 52.9 0.0 1 41 81 122 81 123 0.95
Sequence Information
- Coding Sequence
- ATCCCGAGCAGCACGCTGTACAAGGTGGCGCGGCGCGAGGGCATCCGGCTGGTGGCGCCGTTCCACCTGGCGGGCACGGCGTGGCGGCCGCGCGACCTGCAGCGCGCGCTGGCCGGCATCCGCCGCGGCGACCACTCCGTGCAGCGCGCCGCCCACACCTACGGGATACCTACTGGAACTCTGTATGGACGGTGCAAACGAGAAGGAATTGAGTTGTCGAGATCGAATCCCACGCCGTGGTCCGAAGACGCTATGGGAGAAGCTCTGGAGGCTGTGAGAATTGGTCAAATGTCAATAAACCAAGCAGCAATTCATTTCAACTTGCCGTACTCATCCCTGTACGGAAGATTCAAAAGATGTAAATATAATCCGGCTGCCCCACAGCAACAAACTGTAGAATCTCCTGAACTGAACCCTGGCAACACACAATTTCAAGGTTCCTACCAAACCTACCAACACGACGTTCTTCATCCCATTTATCATAATCAGATCAATCAAATGGAGGAGTCCCCATCAATACACTACACATcaataaatcaacatttaacACACGATCAATCTGTGTGTGAAGAGAATACCTACAACGATACCATGTATTATTACAACCACAGCAATGCTATTGTAacaagttga
- Protein Sequence
- IPSSTLYKVARREGIRLVAPFHLAGTAWRPRDLQRALAGIRRGDHSVQRAAHTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYNPAAPQQQTVESPELNPGNTQFQGSYQTYQHDVLHPIYHNQINQMEESPSIHYTSINQHLTHDQSVCEENTYNDTMYYYNHSNAIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -