Bsom001667.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- CAUYWD010000111.1:5054-26810[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-09 2e-06 28.6 0.0 4 38 100 135 100 140 0.88 2 4 3.4e-12 4.7e-09 37.1 0.1 2 39 152 189 151 192 0.93 3 4 9.3e-14 1.3e-10 42.1 0.0 3 45 208 251 206 251 0.95 4 4 9.4e-17 1.3e-13 51.7 0.0 1 41 258 299 258 300 0.95
Sequence Information
- Coding Sequence
- ACGGCTTTGGAATCCTTCTGTCCAGCCGCGCCTGCAGCCATCCCAGTCTCGATGACGTCAGAACCAGTCGATATTCCGCGGACGTTGGAAACACTCGCACCACTAACTCACAGCAGCTCTTCAATCCATCTGGAACAACTTTCCATGTTATCTGAAGATGAACAGTCTTCGGAGTTTATGCCGCTTTTATCAATCAAAGATGAACCCTCTTCTGAAGGAGAAGCTCCAACGACGAGTGGGGATGAAACCAATGAAAGTCAGTCTTCTCGAAGCTCAGGCAAATCGTGGACTGCCATTGATATGGAGAATGCCCTTCAAGCTCTCAGACAACAGGATATGACACTCACTAAGGCTTCTGCAAAGTTTGGGATACCATCCACGACGCTGTGGCAGCGAGCACACCGCGCCGGTATCGACACTCCCAAACGCGAGACGTCGGGGCGAGGCTGGCAACCCAACGCGTTGCGAGATGCGCTGTCTGCTCTACGACAGGGAAAACTTTCTGCTAATAAAGCTAGTAAAGCTTATGGCATCCCGAGCAGCACGCTGTACAAGGTGGCGCGGCGCGAGGGCATCCGGCTGGTGGCGCCGTTCCACCTGGCGGGCACGGCGTGGCGGCCGCGCGACCTGCAGCGCGCGCTGGCCGGCATCCGCCGCGGCGACCACTCCGTGCAGCGCGCCGCCCACACCTACGGGATACCTACTGGAACTCTGTATGGACGGTGCAAACGAGAAGGAATTGAGTTGTCGAGATCGAATCCCACGCCGTGGTCCGAAGACGCTATGGGAGAAGCTCTGGAGGCTGTTAGAATTGGTCAAATGTCAATAAACCAAGCAGCAATTCATTTCAACTTGCCGTACTCATCACTGTACGGAAGATTCAAAAGATGTAAATATAATCCGGCTGCCCCACAGCAACAAACTGTAGAATCTCCTGAACTGAACCCTGGCAACACACAATCTCAAGGTTCCTACCAATCCTACCAACACGACGTTCTTCATCCCATTTATCATAATCAGATCAATCAAATGGAGGAGTCCCCATCAATACACTACACATCAATACATCAACATTTAACACACGATCAAACTGTGTGTGAAGAGAATACCTACAACGATACCATGTATTATTACAACCACAGCAATGCTATTGTAACAAGTTGA
- Protein Sequence
- TALESFCPAAPAAIPVSMTSEPVDIPRTLETLAPLTHSSSSIHLEQLSMLSEDEQSSEFMPLLSIKDEPSSEGEAPTTSGDETNESQSSRSSGKSWTAIDMENALQALRQQDMTLTKASAKFGIPSTTLWQRAHRAGIDTPKRETSGRGWQPNALRDALSALRQGKLSANKASKAYGIPSSTLYKVARREGIRLVAPFHLAGTAWRPRDLQRALAGIRRGDHSVQRAAHTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYNPAAPQQQTVESPELNPGNTQSQGSYQSYQHDVLHPIYHNQINQMEESPSIHYTSIHQHLTHDQTVCEENTYNDTMYYYNHSNAIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -