Bphi025232.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000030.1:4313719-4328121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4 9e+02 1.2 1.4 1 23 201 223 201 223 0.78 2 13 0.13 13 7.1 0.6 1 19 278 296 278 299 0.96 3 13 0.024 2.3 9.4 0.2 3 23 321 342 320 342 0.90 4 13 0.0031 0.3 12.2 1.7 1 19 379 397 379 399 0.94 5 13 0.0028 0.26 12.4 1.8 2 23 884 905 883 905 0.95 6 13 0.18 18 6.6 0.0 2 23 911 932 910 932 0.96 7 13 0.015 1.4 10.1 0.5 2 23 1020 1041 1019 1041 0.94 8 13 0.22 21 6.4 0.7 2 23 1058 1079 1057 1079 0.96 9 13 4.5e-07 4.3e-05 24.3 1.4 1 23 1085 1107 1085 1107 0.99 10 13 0.00052 0.05 14.6 0.1 1 23 1112 1134 1112 1134 0.97 11 13 0.00022 0.021 15.8 1.7 2 23 1140 1161 1140 1161 0.98 12 13 0.15 14 6.9 0.3 1 19 1166 1184 1166 1185 0.87 13 13 0.0058 0.55 11.4 3.6 3 23 1198 1219 1197 1219 0.96
Sequence Information
- Coding Sequence
- ATGGATAAAAGCAGACGGAAGCCTAGAAAATCTAAGTTGGAACTGCGCAAGTGTTTAGAAGCCGAAGATGAAAACATTGCCGAGTTGGAGAGCAGTATTGATAAACTTGCAAATCATGTAAATGAAACAAACTCAAAAAATGACAATACGATTTTAACACAAGTGTATTCTACGGATCAGTCACATGGTATAGACATGCAATTTCAAGTTAATATTAAAGTTGAGAAATACAACGATGACCAAATGGATTTTGAGGACACAAACTGCGAGGACCAACAAGCCAGTTCATGTAGTACAGACAATGAAAAAGCAGAAAATACATTTTACATACAAACATTGCTACCGGAAGTGGAAGGTTCAAAGACAAGGTCTGTCAAAGAGTTTGTTTTAACAAGAACTATAATACAAAAAGCCATAGAAATGCAGTCCAAGATAGACACAAGTTATGTAGATAAGAGAATCAACATTGCTCTGAGAAATATGCATGGCCAAATTACAGAAACGACAAAATCGTTTCACGAGGAACTTTTGTTCAAGGGCTTGCAGAAGTGGAAGACTTGGGTCGATGTAGGTCCCAGCTCTAGAGACACGCCGCTGCTATACAAATGCTACATCTGCAACAGAGGATGGTGGAGACTTCAACCGTTCAGAGAGCACATTCGAGTTCACAGCGAACCAAATTTCCGTATCGAAGTCGAATCGTCCAACTACGAATTTTACTTAGTCTCATGCTTGGACAATGTGGCGGTGAGCAGCGTCACGGTTGACACGAACTGTTGGAAGTGCGATCGACCGCTGGAGTTTCACAAGGGTATAGGGAGAGCCTACGAGTACGAGTGCGAGGGTTGCAGGTCTATCTTCTTCACTTGTTCAAAGCTGGCCAAACATGAGGGCGTATGCAAAAAACACAAAGATCTTCAAATGCATAGACACCAGCTGTCCGATCAGACGTTGGAAGCCTGCGACATCTGCGGAGCTCATTTCGTGACAGACGAAAGGCTGCGGAGACACTTGGTGGAACAGCATTCTCCAAGAAGTGACGACCCGATCCCATTCCAGCAGAAGAGATGCAAGACCTGCGGAATGAACTATCACTGTAACAAGTACCATGATTGCCCAAAGAAAATAAAAAAGTTTAACTGCAACCACTGCTCCAGGAAGTTCAGCTCGAAATCCCTGCTAGATCTACACAATGCGGTGATAGGCCTGAAGTACCGCAAGTGCGATGAGTGTGGGCAGAAAGTGGAGGAATGCGCGGAGGTGAACCACCTCCTGCAGCACTCCCGGAACTACTCGCAGGTGTACTGGTGCTGTAAGTGTGACCACAGAATCCTTTACACGATGTTCCATCTTTTCAAGAATCATATGAATCAACACAGAAAGGAAAACTGCACGTACTGGGATACGCGGCGCTGGGGTTCCACGATGGTGCTACCCACAAAATGCGTAAAAGGAGAGATCATAGCGTACCAAAGGATTGTTGAAGTGCCCAGTACAAAGCTTATGGACTTCCTCATTGGAATAGATTTTATGCACAGTAATCCGAGAGTGTGTGAATCAAATGATAGCACGGATATCAATGTCTCGGAAGCTGTAGATGAAGATCCTGTCGACGTGGTGAGAGTTGAAAGAGACGTCGAAACTGTCAACGATCAAGACAGTCTAGCATCACAGTTGGACGCTGAAATACAAAAAGACATAGAAATGGAGGCGGCTATTTCTAGTATATTTAAAGCATCTAATTGCTATCAGAAATTGTTAGAAAAGGAATCTGAGGATCTTGATGACGAGTCTGATTCTCATCTATACGACGATGACCTTATCATTCTAGAAAAACCTGAACATGATTTGATAGTTATAGACTCAGATACCGATGATCAAGCAGAGGACATTCCAGACGTAAGTGAAAAAGATACAAATGATGGTTATGATGCAAATGCAAATGAATTAGAATACGCTGCAGAGATAAATAAGTACAGTCTACACACAGAAGTTGCGGTGAAAGCAGAACCTATATGCAACGATGAAGAAGTTACAGAACCTATTACACAAATCAAAAATGACGAAGTCGACGGAGCGACAAATTTTAGTAGGAACGTTAAAATCGAACCCGTGTACAATTCCACCGATGACGATCCATCGACCTGCCCACCAATGGAGTACACCTACAGTAGCCTTGAGCACAACATCAAGAAGGAACCTAGTAGCAATATATTGAAAAAAATACAGCTTGTTAGCAAGCAAACATTAGACGCAAGCATTAACGCAAAGAAATCAAGATTGGATGTCAATCAAATGAATACAATAAGTATTTGCAGAAGAAATGAAAATCGATCTACCTCTATTGAGGCTCTTAAAGAGAGAATTGGTCTTGTTAATAATAAAAACAAACCAACAAGTATTAAAATACAATTTAAAATATCTGCAGAAATTGACGAAATACCTATCAAGAAGGAACCTATAAGTGTAAATGAAGAACCACCCACAATTCTCATAGAAACGGATCCGTACGAGGGTATGACTCCAGCTGAAAAGTATCTGGCAACCCGTACCACGAATGGCCTGTATAGATGTGGCAAATGTCCATTTATGGGCAAATACAGAAAGTTTATAGACCATATACTTGTGAGATGTAAGGGAAGACCGTTGCACTGCACGTACTGTGATAATAGTTTCAAAGACCTAGAGGAGTATGTCCGGCATCTGACCAATCACTCCCTCAAGGCGACCACCTGTCCGGACTGCTTGCAGGAGTTCGAGGTGTCGGCAGAGATCTACCGGCACGTGATTATGCACATTCGCGTGCTTTTCTTCGCGCATAGGTTAGGCGGGACGGAACTGGTCAAGTGCGGCTGCCGCAAGTGCGGCGACAGCGTGGAGCTGGACGACCTGTTCAGCCACTGGGAGAGCCACCTGTGTCTCAACAGTCTCGAGCACATGACGGATCAAGGCAATCTCTCCGACGCATCCGATGTGGAAAGAATAAGTCCAACAGTCATGGAGAAACTCATTGAGAATCTGCTCCAGGTCAAGAAGAGCAGAAAGAGTATGGTACTGAGTTGCGTGGTTTGCGAAAAGCAGTTCGAACGGCGCAACGACACAAAGCGACATCTAATAGAGCACCTGCTTCGCGAAGCCCTGCATGATATGGCGGCGACAAACAACTTACTGCGCTGCCAGATCTGTTCCGCGCACATCGAGGATTTGCAGGAGTGGAAACAGCATATGCGCAACCACGCATCGCTGCCGGAGTACAAGTGCGATGTATGCGACAAGCAGTTCAGCGACTCCAGTAACTACGCCAAGCATCGCAAAGTGCACAACTTCTACTCGTACGAGTGTGATATGTGCGGCGGCAAGTTTCGGGCGCAGGCCAGCCTGATCAAGCATCTACTGCTGCACGAGCAAGAACCGGAAAAGTGTAAGATATGCGCGGCCACCTTCTTCAGTAAGTCGAAGCTTCGCGCGCACATGAAACAGCACCGGATTACCACCTACCCCTGTTACATCTGCAAGAAACGCTTCGAGAGCCTTCGAGATAAATGGGACCATTTGTGGCTGCGGCACAAGCTCAGGAATGTAGCGGCTGACTGCCCCATATGCCACCAGTCTTTCAGGAAGATCAACGACGTAAAGCATCACATGAAGGAGAAGCACAGATATAATTGTTATTCGTACTTACAGTTACAATTACTTGACTGCAAACCAGGCGGTGCTCTAGAGGGAACTTTCACTGTCACATTGCCGAAGACTACACATGCTGAGCATCAAGGAGAATATCTGCAGAAGAATATCTGCATCTAA
- Protein Sequence
- MDKSRRKPRKSKLELRKCLEAEDENIAELESSIDKLANHVNETNSKNDNTILTQVYSTDQSHGIDMQFQVNIKVEKYNDDQMDFEDTNCEDQQASSCSTDNEKAENTFYIQTLLPEVEGSKTRSVKEFVLTRTIIQKAIEMQSKIDTSYVDKRINIALRNMHGQITETTKSFHEELLFKGLQKWKTWVDVGPSSRDTPLLYKCYICNRGWWRLQPFREHIRVHSEPNFRIEVESSNYEFYLVSCLDNVAVSSVTVDTNCWKCDRPLEFHKGIGRAYEYECEGCRSIFFTCSKLAKHEGVCKKHKDLQMHRHQLSDQTLEACDICGAHFVTDERLRRHLVEQHSPRSDDPIPFQQKRCKTCGMNYHCNKYHDCPKKIKKFNCNHCSRKFSSKSLLDLHNAVIGLKYRKCDECGQKVEECAEVNHLLQHSRNYSQVYWCCKCDHRILYTMFHLFKNHMNQHRKENCTYWDTRRWGSTMVLPTKCVKGEIIAYQRIVEVPSTKLMDFLIGIDFMHSNPRVCESNDSTDINVSEAVDEDPVDVVRVERDVETVNDQDSLASQLDAEIQKDIEMEAAISSIFKASNCYQKLLEKESEDLDDESDSHLYDDDLIILEKPEHDLIVIDSDTDDQAEDIPDVSEKDTNDGYDANANELEYAAEINKYSLHTEVAVKAEPICNDEEVTEPITQIKNDEVDGATNFSRNVKIEPVYNSTDDDPSTCPPMEYTYSSLEHNIKKEPSSNILKKIQLVSKQTLDASINAKKSRLDVNQMNTISICRRNENRSTSIEALKERIGLVNNKNKPTSIKIQFKISAEIDEIPIKKEPISVNEEPPTILIETDPYEGMTPAEKYLATRTTNGLYRCGKCPFMGKYRKFIDHILVRCKGRPLHCTYCDNSFKDLEEYVRHLTNHSLKATTCPDCLQEFEVSAEIYRHVIMHIRVLFFAHRLGGTELVKCGCRKCGDSVELDDLFSHWESHLCLNSLEHMTDQGNLSDASDVERISPTVMEKLIENLLQVKKSRKSMVLSCVVCEKQFERRNDTKRHLIEHLLREALHDMAATNNLLRCQICSAHIEDLQEWKQHMRNHASLPEYKCDVCDKQFSDSSNYAKHRKVHNFYSYECDMCGGKFRAQASLIKHLLLHEQEPEKCKICAATFFSKSKLRAHMKQHRITTYPCYICKKRFESLRDKWDHLWLRHKLRNVAADCPICHQSFRKINDVKHHMKEKHRYNCYSYLQLQLLDCKPGGALEGTFTVTLPKTTHAEHQGEYLQKNICI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -