Bphi001048.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000029.1:2148382-2155959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 1.5e+02 3.7 1.4 1 23 28 50 28 50 0.97 2 19 0.0038 0.36 11.9 0.1 2 23 78 100 77 100 0.95 3 19 0.00048 0.046 14.8 3.7 3 23 125 145 123 145 0.95 4 19 0.0058 0.56 11.3 0.1 2 23 150 171 149 171 0.97 5 19 0.00057 0.055 14.5 1.1 2 23 177 199 176 199 0.96 6 19 0.00095 0.09 13.8 3.9 2 23 209 231 208 231 0.97 7 19 0.0019 0.18 12.9 3.0 2 23 238 260 237 260 0.94 8 19 3.2 3.1e+02 2.7 0.1 1 7 264 270 264 276 0.90 9 19 0.29 28 6.0 0.9 3 20 319 336 318 339 0.96 10 19 0.014 1.4 10.1 2.1 2 23 365 387 364 387 0.91 11 19 0.008 0.77 10.9 0.1 3 23 411 431 409 431 0.94 12 19 2e-05 0.0019 19.1 1.0 1 21 435 455 435 456 0.96 13 19 2.7 2.6e+02 3.0 1.0 3 23 499 519 497 520 0.92 14 19 0.42 41 5.5 0.2 2 23 546 568 545 568 0.95 15 19 0.012 1.2 10.3 3.4 2 23 592 613 591 613 0.95 16 19 0.00026 0.025 15.6 0.0 1 23 617 640 617 640 0.97 17 19 0.038 3.7 8.8 0.6 1 23 644 667 644 667 0.97 18 19 0.00019 0.018 16.0 2.3 1 23 706 729 706 729 0.97 19 19 0.56 53 5.1 2.7 1 23 739 762 739 762 0.94
Sequence Information
- Coding Sequence
- ATGACAGTAGCGGAAAGGAATAACGCTGCAACATTCCTACAATTTACCTCAGTCCGACCGTTTACTTCTATGGGTTCGACATTCAGATGTTTTTTCTGCCTACAATACTACAACGAAGTGTCCGCACTATTCAAACATTCCATGATTCACGTCGTTAACGACAGAGACTTTATTTTAAAAAAGTTAATTCCAAAAGGAAAAAGAACGATACTAGTCGATATATCAGATCTGAAATGCCGCCTATGCGGGCAACCCTTCTCCGATCTTAACACGATCAGGCAACATTTGGAAGTCGAACACAATAAGCAATTCTACGCATCAAACAACGGAATGATAGAGTACAAAATGGCGCCCAAAATGGGACTACTCGCGTGTCATATATGCGAAAAAACCTTCCACAATTTCGCGCTTCTGAAATCCCACATGAACTTTCACGTCGGTAAAGTAGTATGCGAAGACTGCGGCATTGGTTTCTTGAATCAATACCTGTTGCTGCAACATAAAGAGACTCATCAATATAGTACTGTCAAATGTGTTCATTGCGAGAAAGCTTTCTTTAAAAAAGCTCAGCTGAAATATCACGTCAACGTCGTACACAAAGGCAAGACCGGAGTCAAAATCAAACGTTGCGACCACTGTTCTCAAACTTTTAAAGAGCGTTATAGTTTGCTATCACATTTAAAAAAAGTTCACGGGGTAGTCAAGAAATTATCTTGTCACGTTTGCAAAACCGAATTCACAACACGTCGTGCGCTAACCGAGCATACGACGAAATATCACACGGAAAAGTACAAATGTGAAATATGCGGATCCACGTTGGAATTACGTCGCAGTGGGACGCAGTCAAAGTCGAATGTTGTTTTAGTGTACCAATCCCCTCAGCGAAGAAATGCTGAACTGATATTAAAGCACTCAACGGCTTATCCTTTCAAGACGAGGTTTAGCCGGATTCTATGCGCGTACTGCCACACAGAATATGAATACCTTACGGAACTGAAGTACCACATGGAGTGCGATCATCCGAATCCCGACTTCAAGAACGTTTTCTACAGAATGAAAGGAAATCTCATCAAAATTGATATAAGTAATCTTAAATGTAAAATTTGTTGTAAAAGTTTTCCAAACGTGGTCAATCTAATGCGACATTTCTCACAGGAACACGATCTACCTGTGAAACTCAACTCATGTAATGGCGTTATTCCTTTTAAGTTCAGCGAGAAGAAATGGATCTGTGTGGCTTGCGATAAGAGTTACTCTGCATTCGTCGACCTGAAACGCCACGTCATCACCCACTTCATGAAATACAACTGCGATAAATGTGGAACTACCTTCATCACCCGACACGCGCTAAGGGATCACCAACGCCAAGTTAAATGCTATCGAATAGCCTACAAACCTCGCAATGGTAGAGTTATGAGACCAAGAAGCAACGCGGAAATTATTTTACAATGTTCATCAGCTTATCCCTTTCGAACATGGATGAGCAACTTGAACTGCGTGTTCTGTAGAGTCAAAACTAGAGACCCGATTGTCTTTCGCAGCCACATGGCCTCACATCACGCGAGCTATGATGTCCAGTCAGCGTTCTATAAGAAATTGGGAAAGGCATTCTTAAACGTCGATATAACAGACCTCCGCTGCAAGCTTTGTTTTACCGCTATAGACAATTTTGAAGACCTTATTGACCATTTGAAGAATATCCACCGGCAGCCGATCAGATCTGACGCCCAATTTGGTTTACTCCCTTTCAAATTGAACGATGGCTCAACGTGGAACTGTGCTATATGCTCAAATCAATTCAAGAACTTCTCATCACTAAAGAAACACACCCACAGTCATTTCCAGAATTACGTTTGTGATACATGCGGCGAAGGTTTCATCACAGAATCCGCAATGATATCTCACACTAAAATACCTCATGAAAATAAGTATAACTGCAGTAGATGTGTGGCAACCTTCTCGAGTTTACAGGAGAGAAATGCTCACGTTAAAACTCAACATACATCGACTCCATATTTATGTGGATACTGCAAAGACAAACCTCGTTTTGCTACCTGGGAGATCAGAAAGAAGCATCTTCTAGAAGTACACAATTACGGTACTGGCGAGGACAATTACGAGTGTACACTTTGTCAGAAAACTTTCAAATCTCGGTCCGGAAAGTACAACCACATGTCCAGGGTCCACCGCATCATCAGGGAGTCCGAGTTAAGTTTTACATGCGCCTGCTGCTCGAGGGCTTTCACCAGTCAGCTGTTCTTAGATAAACACATCGCGAAGAAGCACGGTGATCTATAA
- Protein Sequence
- MTVAERNNAATFLQFTSVRPFTSMGSTFRCFFCLQYYNEVSALFKHSMIHVVNDRDFILKKLIPKGKRTILVDISDLKCRLCGQPFSDLNTIRQHLEVEHNKQFYASNNGMIEYKMAPKMGLLACHICEKTFHNFALLKSHMNFHVGKVVCEDCGIGFLNQYLLLQHKETHQYSTVKCVHCEKAFFKKAQLKYHVNVVHKGKTGVKIKRCDHCSQTFKERYSLLSHLKKVHGVVKKLSCHVCKTEFTTRRALTEHTTKYHTEKYKCEICGSTLELRRSGTQSKSNVVLVYQSPQRRNAELILKHSTAYPFKTRFSRILCAYCHTEYEYLTELKYHMECDHPNPDFKNVFYRMKGNLIKIDISNLKCKICCKSFPNVVNLMRHFSQEHDLPVKLNSCNGVIPFKFSEKKWICVACDKSYSAFVDLKRHVITHFMKYNCDKCGTTFITRHALRDHQRQVKCYRIAYKPRNGRVMRPRSNAEIILQCSSAYPFRTWMSNLNCVFCRVKTRDPIVFRSHMASHHASYDVQSAFYKKLGKAFLNVDITDLRCKLCFTAIDNFEDLIDHLKNIHRQPIRSDAQFGLLPFKLNDGSTWNCAICSNQFKNFSSLKKHTHSHFQNYVCDTCGEGFITESAMISHTKIPHENKYNCSRCVATFSSLQERNAHVKTQHTSTPYLCGYCKDKPRFATWEIRKKHLLEVHNYGTGEDNYECTLCQKTFKSRSGKYNHMSRVHRIIRESELSFTCACCSRAFTSQLFLDKHIAKKHGDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -