Bphi025208.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000030.1:3983828-4000719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.018 16.0 1.6 1 23 226 248 226 248 0.98 2 11 7.1e-05 0.0068 17.4 0.1 1 23 255 277 255 277 0.97 3 11 0.0057 0.54 11.4 4.7 1 23 281 303 281 303 0.99 4 11 0.095 9.1 7.5 1.0 2 23 308 330 307 330 0.95 5 11 2.2e-06 0.00021 22.1 4.2 1 23 333 356 333 356 0.98 6 11 1.2e-05 0.0011 19.8 2.6 1 23 359 382 359 382 0.97 7 11 0.16 16 6.8 0.1 2 20 390 408 389 410 0.88 8 11 8.1e-05 0.0078 17.2 0.1 2 23 423 445 422 445 0.94 9 11 1e-06 9.6e-05 23.2 0.7 1 23 451 474 451 474 0.98 10 11 1.3e-05 0.0012 19.7 1.1 3 23 485 505 484 505 0.98 11 11 2.1e-05 0.002 19.0 0.3 1 23 511 534 511 534 0.98
Sequence Information
- Coding Sequence
- ATGGAAAACATAGAAGTGAAGGAGGAAATAAAAGAACGTTTGTACAACCAATGTCGAACTTGCCTCTGCATCGGCAGAAGGATGGTGCCGTCTGGAGAGTTCATTGATGTTTTTCAAAGTCTTACTTCTGGATTTAAATCTGTTGCTGTAGGTGTCAGCGAGGACCTGGTATTGTGCTGGGAGTGCAATGCGATATTAAGGAAATTTAAAAGATTTCAAATGAGGGCGGAAAAAGCAAATGAAATGATTAAATCTGGAGAGAATGCGTCGTTTGCTTTATCAAGTCTGACAACTGTTATATTGAGCGGTGCCAAACCATATGAATTGTACATGTCCAGTCAAGTGTCACAGGACGATATAACAAGAGAGGAAAATGTTTTTAACAGAAATTTTATTAAACAATCAATGTTCATAGATGAATCGGATCCTAAATCAATCTATGAAAATTTCGATTTCGAAGATCGAATTGAAGAATTCAAATTGGATAAAACGTGTAACAAGAAAAAGAAACGCAATAATAAATGGACTAAAAAACAGACAGTTACGAATAAAAAACCTAATTTCAAAATGATAAACGCAGATGTAGATTTAGTGTTTTCAAAGTTTAATATGTCTAAAGAAGAGATAAATAAATACGTCATCAAGGAAGAGCCAATTGAAGACGAGACCAAAGAGTTCACATGTACCGAATGTGGTATTGGTTTTAAAGAAAGAAAATTGTTACAGTACCATTTTAGATACCATAGCAAGGCAAGTGAATTGTATGTTTGCGATGAATGTTTTGTAATATATTCGAACAAGAATAATTTGGAAGCTCATATACAAGATCACAACCATATATATAAATGCAAAGTGTGTGAATACGTCTATTGCAAGAAAAATCAGAGAGAAAGTCATGTTAAAACGCATAGCAAAGTGGTACAGTGTTTGAAATGTAGTTCGATTTTTCGGAAAGAGGACGAATTTTTTCAACATTACAAGGAGCTGCATGAAAAGTACAAATGTGACCATTGCGGTTTTACCTTCAAGAAGAAATACACTTTGGCGGAACACATCAGGAGGCAACACACTAATCACGAATGCAAGGTGTGTTCGAAAAGTTTTCCACGGTACAGTAGTCTGTGGCTCCATACCAAGACACAACACGCTGAAACCGCGGCGCCTTCGTATTGCGTCGAGTGTGACAGGACTTTTCCCGACGACATCCGCTTCAAATGGCACTTGACCAATACTACCAAGCACACGCCCAAGAAAAAGAAAAGGATCCCATGTCCGGAATGTGATAAAGTGTTCAGTAAAAATATATACATGAAGGATCATTACAATTTGATCCACTTGAAGAAATATAAATACCGCTGTGACGATTGCGATAAGAATTACATTCGCAATGCAGATTTAATTAAACATAAACGCAAGATCCACGAGGGTATCATGCCGGAAAAAAATAAAATTTGCAACCTCTGCGGTCGGAAATTTAGCACTAACAAGATATTGGAGAATCATATGAGAACTCACACGGGCGAGCGGCCATACACCTGTTCGCATTGTCCAGCGAATTTTGCTCAAACCGCTGCGCTCACTTCGCACATACGATCTATACACAGTGGGGTAGTATGA
- Protein Sequence
- MENIEVKEEIKERLYNQCRTCLCIGRRMVPSGEFIDVFQSLTSGFKSVAVGVSEDLVLCWECNAILRKFKRFQMRAEKANEMIKSGENASFALSSLTTVILSGAKPYELYMSSQVSQDDITREENVFNRNFIKQSMFIDESDPKSIYENFDFEDRIEEFKLDKTCNKKKKRNNKWTKKQTVTNKKPNFKMINADVDLVFSKFNMSKEEINKYVIKEEPIEDETKEFTCTECGIGFKERKLLQYHFRYHSKASELYVCDECFVIYSNKNNLEAHIQDHNHIYKCKVCEYVYCKKNQRESHVKTHSKVVQCLKCSSIFRKEDEFFQHYKELHEKYKCDHCGFTFKKKYTLAEHIRRQHTNHECKVCSKSFPRYSSLWLHTKTQHAETAAPSYCVECDRTFPDDIRFKWHLTNTTKHTPKKKKRIPCPECDKVFSKNIYMKDHYNLIHLKKYKYRCDDCDKNYIRNADLIKHKRKIHEGIMPEKNKICNLCGRKFSTNKILENHMRTHTGERPYTCSHCPANFAQTAALTSHIRSIHSGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -