Bphi025324.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000030.1:5485939-5488287[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.6e-07 2.5e-05 25.0 2.0 1 23 8 31 8 31 0.95 2 20 0.0025 0.24 12.5 1.4 2 23 37 59 36 59 0.94 3 20 1.1e-06 0.00011 23.1 0.3 2 23 68 90 68 90 0.97 4 20 3.6e-06 0.00035 21.4 1.3 2 23 99 121 98 121 0.95 5 20 0.00014 0.014 16.4 0.7 2 23 129 151 129 151 0.96 6 20 4e-06 0.00039 21.3 1.0 2 23 160 182 159 182 0.95 7 20 3.5e-06 0.00034 21.5 2.5 1 23 188 211 188 211 0.98 8 20 1 1e+02 4.2 2.3 1 23 218 241 218 241 0.90 9 20 2.4e-05 0.0023 18.9 0.7 3 23 260 281 259 281 0.97 10 20 0.0013 0.12 13.4 0.8 3 23 310 331 308 331 0.96 11 20 0.6 57 5.0 0.6 2 21 339 358 338 359 0.93 12 20 0.01 0.98 10.6 1.0 2 23 368 390 368 390 0.95 13 20 0.0016 0.15 13.1 6.6 1 23 410 433 410 433 0.97 14 20 1.7e-05 0.0016 19.3 0.7 2 23 440 462 439 462 0.96 15 20 5.2e-05 0.005 17.8 4.6 2 23 469 491 468 491 0.94 16 20 0.041 3.9 8.7 1.3 1 23 497 520 497 520 0.96 17 20 0.15 14 6.9 6.5 2 23 528 550 528 550 0.94 18 20 0.0019 0.18 12.9 0.3 1 23 557 580 557 580 0.96 19 20 0.066 6.3 8.0 1.4 1 22 587 608 587 610 0.85 20 20 0.00015 0.014 16.4 2.3 2 23 624 646 624 646 0.97
Sequence Information
- Coding Sequence
- ATGTTTCAAAGTCAAGCGGATTTTGTATGCGACTATTGTAACCGAAGCTTTACGAGGAAATACAACCTTCAGAGCCACATTGAGAATTATCATTTGAACTCCTCGTGCTGCTGTGAAATATGCGAGCAGAGGTTTGGAAGCCCTGCCGGTTTGCAACAACACCTCTCACGTGGCCACAACAGGTACGGTCAGGCTTATCCGGAGTGTGATATATGTGGACGGGTGTTTACGAGGAAACAAAATGTAACTTCTCACATGATCACAGTGCATTTACAAGGTGCTCGATCAGAAATCAGATGCACAGTGTGTGATAAAACATTCACAACGATAAGAAACCTGAAGAGACATACGAATCAAATTCACAACCCATATACAAAACATCCAACTTGTGATGAATGTAAGAGAGTGTTTAAAGGGAAACAGTCTCTTATAACCCATATTCTATCCACTCACCAAGTGACAAAAAGAGGGATGATAAAATGCCAGCTGTGTGATAAAGTATACACTAATAATAGAAATTTAAAACGACATGTGGAAATGTTTCATGGAGAAAGAGGTGAATTCAAATGCGATTCATGTCCCAAAGTCTACACGTCTAATCAGAGTTTAAAAAGGCACACCAGAACTCGACATAGCCTTAAGAATATACAATACAATTGTCCAAAATGTTACAAGACTGTATTTGGAACGGACGATATAAATAGACATGTAACATATTGTCATGGATATGATCTGACAAATGTATACAATAATACAGACTTCAATCTAAAAAATATTTGTACTAAATGCAATAAATCATTCAATGAGGAACCTCTATTGCGTCGGCATATAAAAACAGAGCATTCATTTCAAGATTTTTATAACTACTGTCGAAGATCTCTTTTGAAATTAGTCAAAACAACGAACCAAAAGAGACAGTTCATCAATTGTGAATTCTGTAAAAACGCATTTGTAAATGTCCACGAATTAAAAGATCATATGAGAGTGAACCACGATAAAGAATACAGTTTATCATCGTGCAATGTGTGTTTCAATAAGTTTTATAGTAAGGAAACAATGTTGGAACATAGAAAAATATGTTTCCCACCACCGAATGCAAATTCATGTTCATATTGTAACAAATTATTTACTGACATCTCGAGTCTGGAGTTCCATACAAGGATTTTCCATCCGCAAACTCAAATTAATGATTCAGTTCTCTCCGATGAGGCTTTGGACCTTGGCTGCTATAAATGTACACATTGCAACAGAGTGTATTACAGTGATAGGTCTCTGAAACACCATATAAAGTTGAAACACACAGCGGAGAAGACAGTAGAGTGTCAATTCTGTGGTAAAGTTTGCAGTAATAAGTACTACCTTGCATCTCACATCAAAATTGTTCATACTGCCACTGCCTGGTCAAAGTGTCATTACTGCGACAAACAATTTAAATCGAAAAGAAATATACGAAGGCATATAGAGTATACACATCTCGGTATGCAAAGATATAAATGTATTGAATGTGCGACACTGTTTAAAGAGAAAAGAAGTCTTAGAAAGCATGTGAGAATTAAACATCCAAATTCAAGTCTATTTCCCGAATGTCATATATGTCACAAACGTTTTGAATCTGCAAAGTCGTGTAAAATACATTTAAAACTTTTACATTCATTTAATATGAACACACATCCATGTGATTTATGCTCAGTCTCTTTTAATTCTATGGAAGCTCTTAATATACATCTTCAGATGAGTCATTTAGCTGAAGACGAGATATATAAATGCGAAGAGTGTAATCTTGTTTTCAAAGGCCATGAGAAGTTCGACCTACATAATCAAGCAACCCATTGTAATGTTGTATTAAATGTTAAAAGGAAATCATTGCCTCGGTGTGTTATTTGTGTAAAAGACTTCAGCTCGAGGAAAACATTGAAGAGACATATAAAGAAGTTCCACGAGGAGCTTGATGTTGAAGAACTTGCCAATTATGGCTGGCTGGTGAACGTCACTAATGTGGAATGTGAAGAATGCATCAAAAGTTTAAGTGATGATGTTAAATATAATCTTTACAAGAACATGAAGCATTTAAGAGAATCAATTGTCTTTCAATGTAAGATGTGTTTATCCTCATATAATGCGCTTGAATATGCTGTGTTGAGATATAAAGTGGTTAATGCATGTAAAAGTAAAATGATTTTAAGTGAGTTCTGCACAGCTGAAATGAGTGATTGTGACAGCCATCTCGCTTATGATGGATCGGAGCTGGTGAAGCAAGAGAACACAGCTGCCGAAATCAAGTTGGAAGTGACTGAAGAATTATTATTTCAAATTAAGACTGAACCAATGTCCCCGGAAGAATATCAATAA
- Protein Sequence
- MFQSQADFVCDYCNRSFTRKYNLQSHIENYHLNSSCCCEICEQRFGSPAGLQQHLSRGHNRYGQAYPECDICGRVFTRKQNVTSHMITVHLQGARSEIRCTVCDKTFTTIRNLKRHTNQIHNPYTKHPTCDECKRVFKGKQSLITHILSTHQVTKRGMIKCQLCDKVYTNNRNLKRHVEMFHGERGEFKCDSCPKVYTSNQSLKRHTRTRHSLKNIQYNCPKCYKTVFGTDDINRHVTYCHGYDLTNVYNNTDFNLKNICTKCNKSFNEEPLLRRHIKTEHSFQDFYNYCRRSLLKLVKTTNQKRQFINCEFCKNAFVNVHELKDHMRVNHDKEYSLSSCNVCFNKFYSKETMLEHRKICFPPPNANSCSYCNKLFTDISSLEFHTRIFHPQTQINDSVLSDEALDLGCYKCTHCNRVYYSDRSLKHHIKLKHTAEKTVECQFCGKVCSNKYYLASHIKIVHTATAWSKCHYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECATLFKEKRSLRKHVRIKHPNSSLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFNSMEALNIHLQMSHLAEDEIYKCEECNLVFKGHEKFDLHNQATHCNVVLNVKRKSLPRCVICVKDFSSRKTLKRHIKKFHEELDVEELANYGWLVNVTNVECEECIKSLSDDVKYNLYKNMKHLRESIVFQCKMCLSSYNALEYAVLRYKVVNACKSKMILSEFCTAEMSDCDSHLAYDGSELVKQENTAAEIKLEVTEELLFQIKTEPMSPEEYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -