Bphi000724.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000008.1:15537059-15538429[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3 8.9e+03 -2.9 0.0 31 41 6 16 6 17 0.79 2 2 1e-12 1.7e-09 37.8 0.0 2 40 34 72 33 77 0.88
Sequence Information
- Coding Sequence
- ATGAGCAAAAGAGATAGTGTTTTACATCGGCGAGCTCGAGAGATTATCAGCAATGTTGATAAATGCCTGGAAACAAAGCAAATTTTTTTAAGTTATGAGGAGAACGCAATGAAAAACGCAGTTGAGGATGTGCGCCTGCACAGCACCTCAATAAGAAAAGCAGCCAAAAAATTTGGGGTACCCCGACAAACTTTATCAAATAAAGTAAAAGGGAAATCGCCAATTGAGAGGAAAATGAGGCCTGCTCCTACGCTAACTAAGGATGAAGAACAACGCATATGCACATGGGTGTACGACTCCGCTGAGGCTGGTTTTCCCATAACGACAGACCAATTGTTCTTTAGCATTCAACGGTACCTTAAGGGCATTAAGCGAGAATGCAAGTTTTTAAACGATGAAAATAAGCCAGGAAAAACTTTTCTTAGACTCTTTATGAAAAGAAATAAAGATGTAACAACAAGGACATCCCAAAATCTCACGTCTTCAAGAGCGTCTGTGACAACCGCTAATATAAGAGAATGGTTTAATAAAGTAAAAAGCAAATTAGAGGAAAAGGGTTGTAATGTAATGTAA
- Protein Sequence
- MSKRDSVLHRRAREIISNVDKCLETKQIFLSYEENAMKNAVEDVRLHSTSIRKAAKKFGVPRQTLSNKVKGKSPIERKMRPAPTLTKDEEQRICTWVYDSAEAGFPITTDQLFFSIQRYLKGIKRECKFLNDENKPGKTFLRLFMKRNKDVTTRTSQNLTSSRASVTTANIREWFNKVKSKLEEKGCNVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00197305;
- 90% Identity
- iTF_00197305; iTF_00197308;
- 80% Identity
- -