Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: chn
Assembly: GCA_963991005.1
Location: OZ022566.1:21062809-21068957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00085 0.076 14.8 0.7 1 23 274 296 274 296 0.98

2 8 0.0021 0.19 13.6 4.0 1 23 302 325 302 325 0.96

3 8 0.0047 0.42 12.5 4.0 1 23 416 438 416 438 0.98

4 8 0.18 16 7.5 0.1 1 23 442 465 442 465 0.96

5 8 1.5 1.3e+02 4.6 0.1 3 23 470 491 469 491 0.92

6 8 0.018 1.6 10.7 1.3 1 23 663 685 663 685 0.98

7 8 0.00043 0.038 15.8 0.1 1 23 708 730 708 730 0.98

8 8 0.87 77 5.4 7.8 1 23 844 867 844 867 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00085	0.076	14.8	0.7	1	23	274	296	274	296	0.98
2	8	0.0021	0.19	13.6	4.0	1	23	302	325	302	325	0.96
3	8	0.0047	0.42	12.5	4.0	1	23	416	438	416	438	0.98
4	8	0.18	16	7.5	0.1	1	23	442	465	442	465	0.96
5	8	1.5	1.3e+02	4.6	0.1	3	23	470	491	469	491	0.92
6	8	0.018	1.6	10.7	1.3	1	23	663	685	663	685	0.98
7	8	0.00043	0.038	15.8	0.1	1	23	708	730	708	730	0.98
8	8	0.87	77	5.4	7.8	1	23	844	867	844	867	0.91

Sequence Information

Coding Sequence: ATGGAGGTAGCAATGCCAATGGCTGGCAGTGCTATAGACTGCTATGAAGATATGTTTAAGGAGATAACCAGAAAACTTTACGGTGAAGATGGTCTTCCAGATTTATCTACTACAGAACGAATACCTTCTACAGGTACAGACAGGGGCTTAACACCCATTGATTATGAAGTTGATAACCCTATCTTAAAGCCTGAAGAGCATTTGACAGCTTTCGGGTTGGCCGCTTTGATGCAAAATGGGTTTTCAGGTACTGGTATCCTAAATACTACTTTTCCTACTCATAAAGCTACcatgggtttaaatttaaatgctACGTCACAAGCTGAAGACAAGTGGGTTAGCAGTGAGGAGTCCCTACAATGGACGCAGTCTAAAGTGGCAACTTACAACCCTTTGCAAAAGTTATTTAGGTGCTCCGATTGCGAATCTGTCGGATATCTCCATCGTGTTGCTGAACACTGGTTGGGAACCCATTCGAATTTAAGAGCTTTTCATTGTCCCCAGTGTTCGTACGAGAGTGCGTGGGCCAGATGCGTTCGAATACATTTAGGAAGACAACATAACATCAACATAGATGAGTCGTGTGATGCATTGACCAAAGATAACCCGGTTCTACAAGATATTGTTAAATTTCTCCAAaggctaaaaaataaaatggataGTGCTGGTAATAAGCCAACTTCTACCAACTCCACAAGTCAAACAGTATCTGCAGAAGAGTTTCAAAATATGACTTCTACCACCTCTGTTCAAGCAAATTTAAGCCAGTCTTCTTCAGTATCAAATAATGGTGAAATATCAGTGTCTTCAAATAAAAGGTATAGCTGTACCTACTGTCCTTATGCAACTGACAGAAGAGACCTTTTTACAAGGCACGAAAATATTCATAGAGAAGAGAAACCATTTCAGTGCTACGTCTGTCAAAAACAGTTTAACAGGGCGGATCACGTGAAGAAGCATTTTTTGAGGATGCATCGCGATCATCCTTACGATTTAAATAGAATTCGAAGACACCCACCGAAAAATGCTTCTGGAATGTCCTATTATCAAAAGTACAATTCTAATTCTACCACGGTACAGGCTGATACCATGAATTCCTTATCAACAATTAGTTCCTTGTCAATTCCTGGATTTAATGGTATGTCCAGAAGTCCATCTGTTTCAAGTATACGTCAGACAGACGTAAAATCACTAGGTAAACCAAGTCTGACATCAAAAAGCGGCAAAAAGAAAGGCGAGAAGAGGTTTTCATGTTGCTACTGTTCTTGGTCTGGAGTAGATAACTGGTGTCTTAAAAGACACATGAACACTCATCTGAAGCCATTTGTATGTGGACTTTGTGACTATAAAGCTGCAAGATCAGAAAGGCTAGCCACACATGTTTTAAAGGTTCATAATAAAAGAGCTTGcgcaaaatgcaattttttggcCGATGATTTATCTCAATTGACTGCTCATCAACAAGAACAACAccCGCTGGAATCACGTAATCGAGCACTTACTGGCATGCCAGCAAGTACTAGTACGAGCAGCGTTAGTAGCAGTAACATTTTAAGAACCAATCCCTTTAATAGTTGTACTACTACACCATCAGCTACAATTACTTCGTCTGCTAGTGCTAGTAATACGAGTAACAATACTAATTCTagCCAAACACAGAGTATTTTGAAGAATAGCGACCTAACAGCAGCAGCTGCTCAAATTCTTCAACACAACCGCTTTCTCCAAAACGAAGTAAAATCCTGGAAAAGCCAAATTCCCAAACAACATGGAGCAGCTCGGTTGTTCAGCTACATGGAAGCTAGCGATGGATCAGAACCAGAAATTGAATCGCATTCAAGAACCAGTACCGCTGAGGACATGTCAAGCAGAGCCCCTCATTTAACACACAGAATCCAGTCGGATTTTCTTGAGGCGGGAGGTGTGGATGTCAGCCAACCAGAAGCAGAAGAAGAAGCAGGAGAAGAAGAAACAGAGCTTCCCTTATTCGTCTGCCAGACGTGCGGGTGCGAGTTCGAAGACGATTTGTCTTTGGAGACGCATCAATTTACCCATCGCCACGTCACCACATCTCCCGCCAAAAGTGAGGACACCAAGGAAAACGTAGATCCGTATAGAAAGTATTCTTGCAAGTTGTGCGATGCTTCGTTTGAAAATCAGAACAGCATCATGGCTCATATGGCCATACATACAAATTTAACGGCAAAACCCGTTGTTTTACCAACACCTTTAAACAATTCTGGAAAAAGAAGTAGGAAACAAAGCAAACCTAAAAAAGTCATTATTCCTTATTGGGATTCCGATGAGGTTGAAGTTTTAAGACACCTAAATGGTAAACTCAGAAAATGGAAAGGGTATCTTACATCAGAGACTCCCTTAGGAGCAAGTAAATTAGTAGATAAATACATGGCCCAATTGGTTACGAGGCGAGGTCTTACATGTAAGATTTGCAGGAACTCCGGTGTCAGTCGCTATCACACCAAAGCTTCCTTGGCTCTACATCAATACTGGAAGCATTCACGAAAAAGGTTTTGCTGCGAACACTGTAATATGACCTTTAAACATCGTTATCAAACTATTCTGCACTCTAGCAGGGTTCATACAGAACAGAACACCCTGAAACATGTAAATAACCCCAGTAACTTGACACTTATGATGCCTGCTATTAAAGAAGCTACCCATATATCCCTAGAAAATGTTTCTGCAACGGACCTTAACTCTTTTACGAATTTTTTCAACAGTTCACATAGCGTTGCTGTACCTGATGCCAATATGTCAAATGCCCATAAATTAGGGATGTCATTTTTCGACCATTCTTTTATTCAGAATAACGTGGTTAGCAACCATATGCCTATTATTATACCAACTTTTCAACCTAATTAA
Protein Sequence: MEVAMPMAGSAIDCYEDMFKEITRKLYGEDGLPDLSTTERIPSTGTDRGLTPIDYEVDNPILKPEEHLTAFGLAALMQNGFSGTGILNTTFPTHKATMGLNLNATSQAEDKWVSSEESLQWTQSKVATYNPLQKLFRCSDCESVGYLHRVAEHWLGTHSNLRAFHCPQCSYESAWARCVRIHLGRQHNINIDESCDALTKDNPVLQDIVKFLQRLKNKMDSAGNKPTSTNSTSQTVSAEEFQNMTSTTSVQANLSQSSSVSNNGEISVSSNKRYSCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHRDHPYDLNRIRRHPPKNASGMSYYQKYNSNSTTVQADTMNSLSTISSLSIPGFNGMSRSPSVSSIRQTDVKSLGKPSLTSKSGKKKGEKRFSCCYCSWSGVDNWCLKRHMNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACAKCNFLADDLSQLTAHQQEQHPLESRNRALTGMPASTSTSSVSSSNILRTNPFNSCTTTPSATITSSASASNTSNNTNSSQTQSILKNSDLTAAAAQILQHNRFLQNEVKSWKSQIPKQHGAARLFSYMEASDGSEPEIESHSRTSTAEDMSSRAPHLTHRIQSDFLEAGGVDVSQPEAEEEAGEEETELPLFVCQTCGCEFEDDLSLETHQFTHRHVTTSPAKSEDTKENVDPYRKYSCKLCDASFENQNSIMAHMAIHTNLTAKPVVLPTPLNNSGKRSRKQSKPKKVIIPYWDSDEVEVLRHLNGKLRKWKGYLTSETPLGASKLVDKYMAQLVTRRGLTCKICRNSGVSRYHTKASLALHQYWKHSRKRFCCEHCNMTFKHRYQTILHSSRVHTEQNTLKHVNNPSNLTLMMPAIKEATHISLENVSATDLNSFTNFFNSSHSVAVPDANMSNAHKLGMSFFDHSFIQNNVVSNHMPIIIPTFQPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01188875;
90% Identity: iTF_00444705;
80% Identity: -