Bpel037493.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022564.1:16014049-16031495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.0093 17.7 0.5 2 23 235 257 234 257 0.96 2 13 0.064 5.7 8.9 1.6 1 23 266 288 266 288 0.92 3 13 0.16 14 7.7 1.5 1 23 300 323 300 323 0.92 4 13 0.038 3.4 9.6 2.6 1 23 332 354 332 354 0.98 5 13 1.6 1.4e+02 4.5 0.6 1 23 366 389 366 389 0.94 6 13 0.056 5 9.1 2.2 1 23 398 420 398 420 0.96 7 13 1.7 1.5e+02 4.4 1.5 1 23 432 455 432 455 0.93 8 13 0.12 11 8.0 2.4 1 23 464 486 464 486 0.95 9 13 0.0031 0.28 13.1 0.3 2 23 498 520 497 520 0.96 10 13 6.3 5.6e+02 2.7 2.1 1 23 529 551 529 551 0.96 11 13 1.8 1.6e+02 4.3 3.0 1 23 563 585 563 585 0.93 12 13 0.62 56 5.8 1.8 1 23 597 619 597 619 0.97 13 13 0.0003 0.027 16.3 3.0 1 23 628 650 628 650 0.97
Sequence Information
- Coding Sequence
- ATGATGAAACATGTAATTTGTCTAATTTTAGTAGAAGTAAAAGAAGAGCATGAAGATATGCCGTCAACTCATTCATTGGAAAAGATTCCCAACACCTCGGAGATAAAGGCAGAGCCAGAATGGAGTCAAATTGAAATAGAACCATTTTCAGGAGATCGTCTGGAAAGGCGAGAGACTACATTAAATGTTGACAAAAACATAGAATGTCTTTTAGGTCATTCGAATCAAATTTTGGACACCATTTTTGATATGCCCGACATTTTATCTCCTGAAGAAATAGAGAAATcagtaaaaattgaaaatgatgaaACCACACTTGAATCTGAACGTATGCCAGAACTCGTTTTAGTTGACTGCAATATTAAGGATGAAAAAATCGATGAAGACATTAACGTTAAAGGGACCAACTTTGAACACAATCAATTTGTGTCTTCGAGTGGCGACTATAACGATGTTTGTCTATTTGAAGCAAATTGCAAAGATGATTTAAATAAACATCCCCAATATAAAAATTGCGAAGAAGCGAAAGTATGGTATGGTAACAAAATTGACGAAAaccttttgaaaataaatggtCACCAAAATGGGGAAGAAATTAATTTGTACAAATTTGACCAATGTGAAGATCAGACACTTCAGAAAAGTAATTTTCAATTACACCTGTTAAGACCTAAAGAAGAAGTTAATGATTCAAATAAGTTGAAGTGTGATCAGTGTCCGTATGTAACCACTAGGAAAGGTGACTTAAAGAGCCACATCTTGCGACGACATAAAAATAGAGACGAAATTGATACATTTGACTGTATTCATTGTGATTTCCGTACGGTTTATAAAGGAAATTTGGAGACGCATCttttacgacataaaaatatagaagaagTTGATGATTCAAATAAATTCAAGTGCGATGAATGTTCTCATGTAGAACTTAGGAAAAGTGACTTAAAGAGACACATGGTGGTACGACATaaacatatgaatgaaattcagACATTTAAATGTAATCTCTGTGATTTCCAAACCGTTTATAAACATAGTATGGCGTCACACATTTTACGGCATAAAAACATAGAAGAAGTTGATGAATCAGATAAGTTCAAGTGTGATCAGTGCGCATACGAGACATTAAGTAAACGTTCCTTAAATAGTCACGTTCTGATACGGCATAGAAATAGGGATGAAATTGAAACGTTCAAATGTATTCATTGTGATTTCCGCACGGTTTATAAAGGGAATTTAGAGACGCACCTTttacaacataaaaatatagaagaagTTGATGATTCAAATAAGTTCAAATGTAAGCAGTGTGCATATGAGACACTAAGTAAGCGTTCCTTAAAGAATCACGTCCTGCTACGGCATAGAAATAAAGACGAAATTGATACATTTAAATGTATTCAGTGTGATTTCCGCACGGTTTATAAAGGAAATTTTAAGAAACACCTTTTACAACATAAAAGTATAGAAGATAATGATTCAAATAAGTTGAAGTGTGATCAATGTGCATATGTAACCATTAGGAAAGGTGACTTAAAGAGCCACATCTTgcgacgacataaaaatatggaCGAAGTTGAGTCATTTAAATGTATTCACTGTGAATTCCAAacgatttataaaaaaagtatggcgATACATATTTTGCGGCATAAAAATATCGAAGAAGTTGATAATTCAAATAAGTTCAAGTGTAGCCGATGTGCATATGTAACACTTATCCAATgtaacttaaagaaacacatcaTGCGACATAAAAACATTAATGAAGTTGACGATTCAAATAAGTTCAAGTGTGACCAATGTGCATATGTAACACTTAAGAAATGTGACTTAAAGAGCCACATCTTGGTACATAAAAACATCGACGAAATTGAGACATTTAACTGCAATCAGTGTGATTATCGCGCCCGTCGTCGAAGTTATTTAAAGAAACACCTTCTTAAACATAAGATGTGA
- Protein Sequence
- MMKHVICLILVEVKEEHEDMPSTHSLEKIPNTSEIKAEPEWSQIEIEPFSGDRLERRETTLNVDKNIECLLGHSNQILDTIFDMPDILSPEEIEKSVKIENDETTLESERMPELVLVDCNIKDEKIDEDINVKGTNFEHNQFVSSSGDYNDVCLFEANCKDDLNKHPQYKNCEEAKVWYGNKIDENLLKINGHQNGEEINLYKFDQCEDQTLQKSNFQLHLLRPKEEVNDSNKLKCDQCPYVTTRKGDLKSHILRRHKNRDEIDTFDCIHCDFRTVYKGNLETHLLRHKNIEEVDDSNKFKCDECSHVELRKSDLKRHMVVRHKHMNEIQTFKCNLCDFQTVYKHSMASHILRHKNIEEVDESDKFKCDQCAYETLSKRSLNSHVLIRHRNRDEIETFKCIHCDFRTVYKGNLETHLLQHKNIEEVDDSNKFKCKQCAYETLSKRSLKNHVLLRHRNKDEIDTFKCIQCDFRTVYKGNFKKHLLQHKSIEDNDSNKLKCDQCAYVTIRKGDLKSHILRRHKNMDEVESFKCIHCEFQTIYKKSMAIHILRHKNIEEVDNSNKFKCSRCAYVTLIQCNLKKHIMRHKNINEVDDSNKFKCDQCAYVTLKKCDLKSHILVHKNIDEIETFNCNQCDYRARRRSYLKKHLLKHKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -