Bpel032844.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022563.1:7004225-7020057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.13 14.1 2.4 1 23 249 272 249 272 0.98 2 13 0.00025 0.023 16.5 5.0 1 23 285 307 285 308 0.96 3 13 3.5 3.1e+02 3.5 3.4 1 23 314 336 314 336 0.94 4 13 0.075 6.7 8.7 2.7 1 23 345 368 345 369 0.96 5 13 9.1 8.2e+02 2.1 0.2 2 23 376 397 375 397 0.89 6 13 0.0098 0.88 11.5 4.5 1 23 402 424 402 424 0.98 7 13 0.048 4.3 9.3 2.5 1 23 430 452 430 452 0.98 8 13 0.099 8.9 8.3 1.8 2 23 459 480 458 480 0.97 9 13 0.24 22 7.1 1.1 2 23 487 505 486 509 0.74 10 13 0.09 8.1 8.5 10.1 1 23 512 535 512 535 0.97 11 13 0.008 0.71 11.8 0.4 1 23 545 568 545 568 0.97 12 13 0.002 0.18 13.7 1.4 2 23 574 596 573 596 0.96 13 13 3.8 3.4e+02 3.3 2.5 1 23 602 628 602 628 0.93
Sequence Information
- Coding Sequence
- ATGGGTAAAGACTGTACGTCCGATTCAAATTGTGAAGATGTCCCTTCATCAGAACCTATTGGGTACAATACAATTGAGGATGAAGATTGTACTgctataaaaattgaaaatcccATGTACGTAGGTGTAACCTCAACAAACATTATAACGAAAGATGCATGTTGCATCCTAGAGAATGACAATGAACAAATTCCTAAATATACTGATTTTGTTACTGAAAATGCAAGTGAAAATCTTACGAATCACATAAATATTGAGGGTATGATTGACACAAAGGAAGAGATACTTCAAGAATGTTTGCCTGTTGTGAATgccttcacaaaaattgaaataactGAGCATAGTTTAGAATTGGGAAATCTACAGGTACTGGAGGATATTTATAGGACTTATAGTGAAAATGCAGTAGAAGATGATAGAGCTGTAAAAGATCGTACAAAACTGAAAGTTAAAAAGCgaaggaagaaaaaaagattatcGAGCATAGAAACGGTAGAGAAGATTGTCGTGATAAACAAAACTGAAAGCTTAAGAATTGAAGAAATGTTGttaaaatcattaaataaaatgaatagcACATCAGTTATACAGAAAGCAGGGGACATTTCTCAGGATGTACCGATATCGAATCCAGGAGCTGAAAAAAACTTAGAAAACGTccctaatttaaataaaaacaagaaTCATATCGTCAGAATTGAACCAAAAGTCGCTCCTAAGAAGAACGAtgttagtaaatttaactaccAGTGTTACGATTGTCAAAAGTATTTCCAGGAACGACAGCTTTTGTCACGTCATATACAAAGGACACATTCAAAACACAAGAAGAAAAAAGAAATGCCTACAGAATATCAGTGTCACGATTGTGGAAAAGTTGTTAAACAccggaaaagtattattttgcaTATAAGACAGCATCATACTCAAGGGgaAGAATTCCATTGTGATAAGTGCCCCTACGTAACAAAGTTAATACAAGCTTTAAGAACTCATTGTAGAATACACGTCCCTAGGGATCAAAAACCAACTTTTAAGTGCCGCCTTTGTCCATGTATAAGAATTTCTAAAGCGGGCCTGCAGAAGCATATGGACAAGATCCATCATAATATAATCAAGAGGAAAAGGTGTGACCTGTGCGACTGGGAGGGTGACGTAGACTGTCTAAGCGCCCACGTGAGAATAGTACATTCTGATgaagaatatttttgttataagtGCGATTTTAAGACAAAAAATAAAGGAAATCTCGGCATTCATCACCGCACACACAAcGAACTCAAAGAGTTTAGCTGCCCAAAATGCCCGTTTCAGACACACTTTAAAGCCGGTTTAAAGAGTCACCTGCAAAGACACGGCGGTGGCGGTTTCAAAAAATGTCCAGAATGTCCGCGTACGATAAGGGAAGTCAGTTTTAGGAGTCATGTAAGAACTTGTCATAAGTTTAGGCCGAAAACGAAATGTCCACAATGCGGAAAGGAAGTTTTCTCCCTGGTGAAGCACTTGAAGACCCATAACGGCGGACATGAGAAGCACAAGTGCCCAGAGTGTCATTTTACCTGTACGAATTTATCTTACATGAAGCTGCACATACAAAAATGCCACCGAGAATCCACAGACGGAATAAAAAAGTTCATCTGCTACCATTGCGACAAGGAATCTTATATCAAAGCCGATCTGATCGTACATATTAAATCTGTGCACGAGCACAATCCGTGCGAATGTCCCGCTTGCGGAAAGAAGTTAAAGTCTAGGATGTATCTGGCATCTCACTTAAGAAGAATGCATGATAAATTCAAGTGGTACGAGTGCCAGTTATGCCCCAGGGATAATGTATACGGAACGAAACACAAGCACAGATTGGAAAATCATATGCTTCAACATGCTAGCAGTGACGGGtaCTTGACGAAAGTGATCGCGACGACGCTGTTAGATTCCGTACCTGCGTTGTTAATTACTACTCCTAAATTTTACACCATATTTATTGAGCAGAAGCACATTAAACGTATCGCGATTTCGAGGCGACCAAGCTTCCGCGTGGACGTGCCCGAACAAAATCGACCAGAGGCGCAGGAGCTAGCGACCGAAGGTCGCAGCACGCGTAGATGA
- Protein Sequence
- MGKDCTSDSNCEDVPSSEPIGYNTIEDEDCTAIKIENPMYVGVTSTNIITKDACCILENDNEQIPKYTDFVTENASENLTNHINIEGMIDTKEEILQECLPVVNAFTKIEITEHSLELGNLQVLEDIYRTYSENAVEDDRAVKDRTKLKVKKRRKKKRLSSIETVEKIVVINKTESLRIEEMLLKSLNKMNSTSVIQKAGDISQDVPISNPGAEKNLENVPNLNKNKNHIVRIEPKVAPKKNDVSKFNYQCYDCQKYFQERQLLSRHIQRTHSKHKKKKEMPTEYQCHDCGKVVKHRKSIILHIRQHHTQGEEFHCDKCPYVTKLIQALRTHCRIHVPRDQKPTFKCRLCPCIRISKAGLQKHMDKIHHNIIKRKRCDLCDWEGDVDCLSAHVRIVHSDEEYFCYKCDFKTKNKGNLGIHHRTHNELKEFSCPKCPFQTHFKAGLKSHLQRHGGGGFKKCPECPRTIREVSFRSHVRTCHKFRPKTKCPQCGKEVFSLVKHLKTHNGGHEKHKCPECHFTCTNLSYMKLHIQKCHRESTDGIKKFICYHCDKESYIKADLIVHIKSVHEHNPCECPACGKKLKSRMYLASHLRRMHDKFKWYECQLCPRDNVYGTKHKHRLENHMLQHASSDGYLTKVIATTLLDSVPALLITTPKFYTIFIEQKHIKRIAISRRPSFRVDVPEQNRPEAQELATEGRSTRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -