Bpel041132.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022565.1:36636331-36639448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00056 0.05 15.4 0.3 2 23 302 324 301 324 0.94 2 11 0.31 27 6.8 0.1 1 21 330 350 330 351 0.93 3 11 0.011 0.95 11.4 6.4 1 23 448 471 448 471 0.96 4 11 0.028 2.5 10.0 0.9 2 23 478 500 477 500 0.93 5 11 0.00063 0.056 15.2 2.9 1 21 600 620 600 621 0.95 6 11 0.013 1.1 11.1 0.9 2 23 633 655 632 655 0.94 7 11 0.14 13 7.8 0.5 1 23 658 681 658 681 0.96 8 11 0.059 5.3 9.0 0.1 2 23 713 735 713 735 0.96 9 11 0.25 22 7.1 0.5 2 23 742 764 741 764 0.91 10 11 0.035 3.1 9.7 0.5 2 23 773 795 772 795 0.94 11 11 4.1 3.6e+02 3.2 0.3 3 23 802 823 801 823 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAAAACTATAGAAGacttttatgttttcttgaaaaacTTAATAGTAAGAGTGTGCAAACTGAGGATTTTTTAGATGTTTTACTTGGAAATAAATCAGTTTTTAAGGATTGTGACCAAGATTTTCCACTTACCAGTGAATTCCTTAATAAAGAGGCTAAGAAATATGACTCCCATAACATCTTAGTTGATTATGAAGTACTTTCAGATTCAAGCTCTGAGTATGAGAACAATTCAAATACTGGACAAGtgatttttggagaaaaaataaaaagtttaaatcattttaatcaTTTAGTTGATAATTTAGTCTTTACAGGCAGGCCTACAGATTTTTACAGGCCTTGTGATAGACTTGAGTCTTTCGAATCAAGTCTTATAACCGAAATTTCCGATAGAAAGAACTTGAAGAAGCGTAAAAGTGAGAGTATCGAAAACATATCgactaaaatttgtaaattcgaTTATGGGAATAAAAGGAAATGTAGTAAACCGAAAAAAGTGGAAAAGACCTATGAAAAAAGTGAGGAAGATGATGAAGCACAAGAGAACATTCGGGAGATTAAAAAAGAAGTGTACACCgatgatataaatttaaatgacgAAGTGAATGTGGAAGATAAAGAAATGGCCAGCGGAGCAGCGACGCTTCATGAAACTTGTCTGCTGTGCAATGTTCAGGTTGACGGTGGTGCCTCAAGTTTAACAGAACATTTTGTGAAAATTCATGCAAAAGAATACTATCAAAGGAATACAGAGCTGTTAAAGAGAAATGAGGTTACACctgagaaaaagaagaaaaatttgcCAAGTTTGGTTAAGATTTCTGATTTAAAACGGAGTGAATCAATAGATGGTTGTCCAATATCAGAGGAACCCCCTATTTCACCCCTAAGAGTCTCCTGTCCAAATTGCCGAGCATCTTTTACCACTAAAACCGAACTTTTCATACACCTACAATTGGAACATTTAGATATTTCCACGTATTTATGTGGGATTTGTCTCAAACAAGTAAACTCTGTAACGAGTCTGAAACGCCATATTCAGAATTGTTGTAAGAGTAAGCCCGTTGTGACGAGGTACTATTGCGAAGTCTGTTATTTTGGAGAGAACAATTATAGGAGTTTAGAGTCTCATGTTTTGGTGCATGGGTTTTTGTTGGAGAACTGTAGAAAGGAGGTCAAAAACTTTGATCCAGAAGACTACATTCAGAAAAACGCAAATTTTCAGCATAATTCCGTGTCGCCAGTAAAGAACTTTTCATGTTTGGAATGCAGCCGGTCCGATTTCGATTCAATCCGGAAATTTTCCATACACAGAAGGAACGTACATTCTATCTACCATTGTGACTTATGTAATAAGTATTATGGAAGGAACTCCCACCTATGGAAACACGTCCACAGACTTCACAAAGGTCATCCCAGTGTCACCTGTCAAATCTGTTTGAAAACTAGCGCATCAAAATATCATTTGGCTCAACATTTCGCGAAAATTCACCAACTCAAAACCGTCAAAAGGGAAGAAATCGACTATGAGAATGATCACAATGAGGCCCAAAAATTCGTTGAAATTGATTTTACGAAAAATGAGAAACTCAGATTAAAGAAGCGAGATTCAACGTCAGACCAAGAACCTCAGAACAGTTCCTACGACGAGAACTCGGTAAATCAATGCAGCCAATCGGACAACGACATTTCTTTGGACGTCAAAGAAGCGCCCAAAGAGATCGATCCGTCGCACGACTTGTACACTAACATTCTAACCAATTACAACCCTCCCAAGAATGATGGCGATTTCAAATGTCCAAAATGTGGCAAAGGTTTTCACAAGAGAATGTTGCtgagaaaacacaagaaaaatTGCAGGCCAAAGTTACAAAAAGACCTTCTGACAAGATGCAAGTCTTGCGCAAGAATATTTAAAGATCGCCAGAGTCTCGCCAAGCATCTGATCAACTACCATTCCGATTATGTGTGTGAAATATGCAGCGAAAAAGTGCCTAGCAAGTGTGAAATTGTCACCCACATAAGATTTCAACATCCTTCAAGTCATTTAGTTTGCAGCGTTTGCGAAAATATCCTCAGGTGTAAAGATGACTTGTTAGTCCATTTAGGAGACCACGAGAATTCCAATGTATGTCAGTATTGCGGAGATGCCTTATCTAGCAAAGTAAAACTAAAAATGCACATTCTAAGCCTCCACAGAAAAATCCTCAGTCTGAGCTGCGGGATATGTCTCAAACTCTTCGAAAACCAGCacgttttaaaaaatcacgTGACATTAGTCCATAAGGATCGACTGGACCCTCTGACGTCATGTCCGATTTGCGGGAAAAACTACGGATCGAAATGGAAAACCTTCGATCACGTTAATAAAAGTCACGGGAGAATTTTCAAGGCATGTAAGATATGTCTGGAAATATACGAAACGGACACAGAACTGGAATGTCATATAAAAACTGCGCATCTAAGTCAGCCGATTTCCATGAGCAGTCAAGTGAAACCGAATCCGGTAGCCATATTGAATGCTTCGGTTAAAAGTGAGGCGCCTCCAGCTAGTGTAAATAACAATCGGAATGATATGGAGAGCGATAGCGAGGACAATACAGAGGAGACGGAGAATAATACTCAGAGTAGTGAAAGCGAAGATGAGGAAAACAGCGGACCAGACCAAACTGAAAGCCGGAAATTACCCGtggataacaattttttaacctGTCCAAGTCAAGAAAACAAGATTTCCCTGCTGGAGCGAAGACTATTAGCAAAAACAGTCGTCCAAAGTAATATTGCCGACGAAAAAACTTCTGCGAGCAATTTCCAAAGCAAGCAATACCTGATTGATAAcggcgatttaaaaaaagataattcAGGGCTACTGAGAATTAAACACGAAGAAGACAGCTATGTGAGCGACAAGAAGAGCTATAGCAATAATTTAATTCATCATACTAAGAGGAACAGATCTTTGGAAGTTGGCTGGAATGCACCACGATACCATTCgtaa
- Protein Sequence
- MSKNYRRLLCFLEKLNSKSVQTEDFLDVLLGNKSVFKDCDQDFPLTSEFLNKEAKKYDSHNILVDYEVLSDSSSEYENNSNTGQVIFGEKIKSLNHFNHLVDNLVFTGRPTDFYRPCDRLESFESSLITEISDRKNLKKRKSESIENISTKICKFDYGNKRKCSKPKKVEKTYEKSEEDDEAQENIREIKKEVYTDDINLNDEVNVEDKEMASGAATLHETCLLCNVQVDGGASSLTEHFVKIHAKEYYQRNTELLKRNEVTPEKKKKNLPSLVKISDLKRSESIDGCPISEEPPISPLRVSCPNCRASFTTKTELFIHLQLEHLDISTYLCGICLKQVNSVTSLKRHIQNCCKSKPVVTRYYCEVCYFGENNYRSLESHVLVHGFLLENCRKEVKNFDPEDYIQKNANFQHNSVSPVKNFSCLECSRSDFDSIRKFSIHRRNVHSIYHCDLCNKYYGRNSHLWKHVHRLHKGHPSVTCQICLKTSASKYHLAQHFAKIHQLKTVKREEIDYENDHNEAQKFVEIDFTKNEKLRLKKRDSTSDQEPQNSSYDENSVNQCSQSDNDISLDVKEAPKEIDPSHDLYTNILTNYNPPKNDGDFKCPKCGKGFHKRMLLRKHKKNCRPKLQKDLLTRCKSCARIFKDRQSLAKHLINYHSDYVCEICSEKVPSKCEIVTHIRFQHPSSHLVCSVCENILRCKDDLLVHLGDHENSNVCQYCGDALSSKVKLKMHILSLHRKILSLSCGICLKLFENQHVLKNHVTLVHKDRLDPLTSCPICGKNYGSKWKTFDHVNKSHGRIFKACKICLEIYETDTELECHIKTAHLSQPISMSSQVKPNPVAILNASVKSEAPPASVNNNRNDMESDSEDNTEETENNTQSSESEDEENSGPDQTESRKLPVDNNFLTCPSQENKISLLERRLLAKTVVQSNIADEKTSASNFQSKQYLIDNGDLKKDNSGLLRIKHEEDSYVSDKKSYSNNLIHHTKRNRSLEVGWNAPRYHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196816;
- 90% Identity
- iTF_00196816;
- 80% Identity
- iTF_00196816;