Bpel006642.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022556.1:82212250-82222682[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.3 27 6.8 5.3 1 23 19 41 19 41 0.98 2 20 0.26 23 7.0 1.2 1 23 83 105 83 105 0.98 3 20 0.06 5.4 9.0 3.1 1 23 221 243 221 243 0.97 4 20 0.0042 0.38 12.6 1.3 1 23 267 289 267 289 0.98 5 20 0.062 5.6 9.0 3.2 1 23 303 325 303 325 0.97 6 20 3.5 3.1e+02 3.5 2.0 1 23 331 353 331 353 0.94 7 20 6.6 5.9e+02 2.6 0.2 2 23 375 397 374 397 0.94 8 20 6.7 6e+02 2.6 4.1 1 23 414 437 414 437 0.94 9 20 0.0048 0.43 12.5 4.0 1 23 474 497 474 497 0.98 10 20 4.7 4.2e+02 3.0 8.6 1 23 519 543 519 543 0.98 11 20 4.6 4.1e+02 3.1 0.5 1 23 554 577 554 577 0.93 12 20 0.076 6.8 8.7 6.5 1 23 585 607 585 607 0.97 13 20 0.00065 0.058 15.2 0.8 1 23 610 632 610 632 0.99 14 20 0.067 6 8.9 1.6 1 23 641 663 641 663 0.95 15 20 1 91 5.1 4.9 1 19 667 685 667 689 0.92 16 20 0.00098 0.088 14.6 1.9 1 23 698 720 698 720 0.98 17 20 0.0031 0.27 13.1 0.8 1 23 729 751 729 751 0.98 18 20 0.04 3.6 9.6 2.6 2 23 761 782 760 782 0.97 19 20 0.00064 0.058 15.2 2.7 2 23 793 814 792 814 0.97 20 20 0.0031 0.28 13.1 3.2 1 23 822 844 822 844 0.98
Sequence Information
- Coding Sequence
- aTGTCCAACAATGAAAATCCTACAGGCGAAAATCGCCAAGTGCCTGTAGAAACATACAAGTGTTCGCAGTGCAATTTTTATACCAATCATGAATACTATTTACAACAACACAATCTAACTCACAGTTTACAAGTGTTAATGGAGCATTATAAACGTAACCAGACCAGTTATGACCCAAATGTACAGCCACAGGCCTACGTTAAACCGCATAGTCTGCCTCATACAGTGCAGGTAcctccaaaaatattttcttgtatgACATGTAATTTTGAAACAAATCAGGAAGCATATTATAAGCAACATGTACTAACACACAATAATCAACTTCCTGTCGATCCCTATAGGATGATGGTACAACCTAGTTTTGAGGGTAGTGAAGAAAGTTATCTAAAACACCATAATGTGGGTCAAAACATTCCTTCTATGGAAGCATTTAATTCACGTGATTTCGAAACTGATCGTGAAGTCAATGTAAAGCCTCACGATCTTAAGCTAAACTCTAACAGTTTTGAAACTGCTTTAATTAAGCCAGCTGTTGATACAAATGCCTTAGAAACTTTGCGatgtcaaattaataattgtgaATTCCAGACACAGGATGAAAATGACTGGAGACAGCACAGTCTTAGTCATGATTTGCAAACTCCATGCCCTGAAGTTTTTAGctGTACGAAATGTGACTTTGAAACCCATCAAGAAAATGATCTAAAACAGCACCTTAAAGAGCATCAACAAATTAATGAAATGGACACAGCACATGTTAAGAATGAGGAAAGTAGTCAGCCACCTAAAACAGTTTTTAGGTGTGATAATTGTGACTACGAAACGAATCTtaaagcctttttaaaaagacacATGTTACAACATACTGTCAAAATAGAAGTAAAAGTCGAATTAGAAGAAACATTTAAATGTCCACAATGCAATTTTGAGACGGAACatgaaaagtttttgaaaaGACATGAACTAAGCCAtaaggaaaataaatatttcaagtgTGAGAAATGTCCATTTGAAACTTTGTAcaagaaaatgtatttaaagCACCAACAAGCTCataaatctaaacaaaaagacaAGAGCAAAGATGTCCCTACAGAAAGAACTATAAGATATGATATACAGTGTGATGAATGTGTATTTGATACATATTCTTATGATCTACTGGatgttcacaaaaaaattaaacatcctGTACCTGTGGCTAGGCCTGTACAAGATGATTATGATATTAATCTACATAAATGTTCATATTGCAAGTACCAAACCAATTGGGAACCATGCTTAAGAAGACATATTGAAAGGGTGCATCCTAATGGAAAACCtgtaaaagttaaaaaagaaaaacctgaaaagaaaaaggagaaaaaaatagaaaaaattgtaGAGactaaaaaagaaaaagacCAAGGTGATGAGTTTCGATGTGACAACTGCGATTTTTCGAGTAAAAGCAAACACTATCTCATACTGCATTTAAAACGTTCGCACCTAAAACACGACAAACCGATCgtcaaagtggaaaaaatagaaaaatctaGTACAAGTAAACTGTATGAATGCAagtttagaaattgtaaattccAAACATCTATTAAAAGTAATTATTGTCACCATCTGAGGAAACACCAGGGTCAAAATCCGCAaagaataatgttttatttttgcgaTTTGTGCGATTTCATTACGAAAACTGAAGAAATTCTATCGGATCATAAGAAACGGATACATTTAAGTCATTTAAGGCAAATGTACAAATGTGGCCAGTGCAACTACAAGACAGTCCACAAGCACAGTTTAAAAACACATTCGATAAAACACAAAACGTACACATGCAATCATTGCGGACTAGAGCTAGAATCTGCTTTTGCCTTAGTGAAACATAGGAGATCTCATCAAGTGCATCCGAAGAATAGGATATTCCTCTGTGACGTATGTGGGTTTCAAAGCAAGAACGATAGGTCGCTGAAAATGCATAAGAAAACTCATAATCCGGAATTTAAGTGTCCGGATTGTCCATTCCAGACCCATAGCAAGGTCAACTTCCAGAACCACTGCATAAATCATAAGGGAGCCGATGAAGTTACGATGTTCCCGTGTCCCCACTGCTCATACCAATCGAGGCTGAAGCGCAACCTGGCCTGGCATATGAAGAGACACGCCGACCCgacgaaaataaaaatgtttaaatgtcCGTCTTGCGAGTATCAGACGTTTACGAATGCGCAACTTAAGTCGCATCTCATGGTACATAAGACTAAAGAAGAAGTTATTATGTTGAAGTGCGATTTTTGTACATTCGAAACGAAAAGGAAGTCGAATATGGTGCAGCATCGATTGCGACATTTAAAAGACTCCCCGGATGTACCGCTGCTGTCCTGTCCAGATTGTAATTATACTACCGTCGCTAAGCGACATTTAAATAAGCATAGAAAGACGCACAACGTCAATCCGGACAAGATGTTCCAGTGTACATACTGTCCGTATAAGATCCATCGGAAGGTATACTTGATGCGGCATATGGAGAATCATAAGCAGGTAGAGACTTACGGAAACGATCAATGGCAGAGGTATACCTTCCCGCCGCAACCTCAAATGCACATTACAGGTGTTACGGTGGTGCCGAATTTGGGACAGAATTTACCGCAACATCCGTTAATGTGA
- Protein Sequence
- MSNNENPTGENRQVPVETYKCSQCNFYTNHEYYLQQHNLTHSLQVLMEHYKRNQTSYDPNVQPQAYVKPHSLPHTVQVPPKIFSCMTCNFETNQEAYYKQHVLTHNNQLPVDPYRMMVQPSFEGSEESYLKHHNVGQNIPSMEAFNSRDFETDREVNVKPHDLKLNSNSFETALIKPAVDTNALETLRCQINNCEFQTQDENDWRQHSLSHDLQTPCPEVFSCTKCDFETHQENDLKQHLKEHQQINEMDTAHVKNEESSQPPKTVFRCDNCDYETNLKAFLKRHMLQHTVKIEVKVELEETFKCPQCNFETEHEKFLKRHELSHKENKYFKCEKCPFETLYKKMYLKHQQAHKSKQKDKSKDVPTERTIRYDIQCDECVFDTYSYDLLDVHKKIKHPVPVARPVQDDYDINLHKCSYCKYQTNWEPCLRRHIERVHPNGKPVKVKKEKPEKKKEKKIEKIVETKKEKDQGDEFRCDNCDFSSKSKHYLILHLKRSHLKHDKPIVKVEKIEKSSTSKLYECKFRNCKFQTSIKSNYCHHLRKHQGQNPQRIMFYFCDLCDFITKTEEILSDHKKRIHLSHLRQMYKCGQCNYKTVHKHSLKTHSIKHKTYTCNHCGLELESAFALVKHRRSHQVHPKNRIFLCDVCGFQSKNDRSLKMHKKTHNPEFKCPDCPFQTHSKVNFQNHCINHKGADEVTMFPCPHCSYQSRLKRNLAWHMKRHADPTKIKMFKCPSCEYQTFTNAQLKSHLMVHKTKEEVIMLKCDFCTFETKRKSNMVQHRLRHLKDSPDVPLLSCPDCNYTTVAKRHLNKHRKTHNVNPDKMFQCTYCPYKIHRKVYLMRHMENHKQVETYGNDQWQRYTFPPQPQMHITGVTVVPNLGQNLPQHPLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444584;
- 90% Identity
- -
- 80% Identity
- -