Bpel018236.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022559.1:3072296-3074302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0019 0.17 13.7 2.4 1 23 265 286 265 286 0.92 2 11 0.41 37 6.4 4.1 1 23 324 345 324 345 0.97 3 11 0.031 2.8 9.9 0.9 1 23 351 373 351 373 0.97 4 11 0.94 84 5.3 5.2 1 23 379 401 379 401 0.87 5 11 2.4e-06 0.00022 22.8 3.4 1 23 409 431 409 431 0.93 6 11 1.3 1.2e+02 4.8 1.6 2 19 449 466 448 469 0.91 7 11 0.035 3.1 9.7 0.2 2 20 498 516 497 518 0.91 8 11 3.2 2.8e+02 3.6 2.1 1 23 517 542 517 542 0.72 9 11 0.00013 0.012 17.4 1.0 1 23 552 575 552 575 0.96 10 11 2e-05 0.0018 20.0 2.3 1 23 581 603 581 604 0.96 11 11 0.00034 0.03 16.1 2.2 1 23 609 631 609 631 0.96
Sequence Information
- Coding Sequence
- ATGGAACAAGATTCTGCGTCCAAGAAACAAACCAAGCAGCCACTAATTACTCCTAAACCTACCCCTTTAGTCTACTATATTAATAGAGGCAGTAAAAGATGTGCATTAATTAACGAAGGTAACTCTCATAGGAAAGTAACCAAAATGCCTGCTCAAAATACATCTATTGATCTTTCATCGGCAAGTCCTTTTGAAGGAAGTGAAAATTTATCACcagaagtagttaaaaaaatatgcaggtTATGTTTAGAAGAAAAAGAAGCAATGTGGCCCTTTTTTTCAGTGCTTACTTTTGATGATGGCAGCTCCATTGATgtcttaaatatttttcaggCTTTGACTGGAGAGAATAGAGAAAAAattgaaaATCCAAACTTGCCTCCATATATTTGTGAGCGGTGCTTAGGTCTTTTATCCAGTGCCAATACATTTCAACAGAAGTATGAAGAATCAACAAGagttttaaatgaatatttggCCAAAGAATGTGCAGAAAATTCAGTTGAAAGCATAAAAGTTGTGATAGATGATCAATCAAAAAATCAGACAGCAGAAGGAgctgaaaacaaaaatattgatgatgGTCGGttacataattttgaatttatatcAACAGAAGAAATTACCTTGCATGACACTAAGAATTTTTCAGAAGTTGCCACCAGAAATATATATACAGCAAAATCAGAATGTGTTGTGAAACCAACTGATAAAGGTTCAGCACCACCTCGAGAAActattactgaagaatttccaacaaatttagaCAAAAATTCAATTCAGGCAAAATTACACCGCTGTCCTATATGTCCCAAATCATTCACTGCAATAGAATTAAAGAAGCATTGTATTACTCACAAAGCTTTTAAAACATATCTAAAAGCCGCTCCAAAATATAATCAAAGGGTCAAGTTCTATGCTACACCCCGGACAGAAAATGTGGGGCTTTTTAACCAGGAGAAGATCAAACACACATGTCCGTTTTGTCACGATGAATTTGACAGTGAACAATTCAAAAATCATATAAAAGAGCACCGTATAGAAGGTAATTTCCCTTGTAATATTTGCAATAGAATTTTCTTGGGGATTAATCATTTGAAAATGCATCAATTGTCTCACAAAAAGGAAGCTccttttaaatgtaaattttgtaagaaatccttttttttaaaaaggaattaTGATTTTCATCTTTTAAGTCATTCTAACAATAAAGAACTGCCCTTTAACTGTAAAGATTGTGACAAAACTTTCTCTAATCCCGAACACTTAAAACGGCATAACTTCATAcacaaaaattatatgaattATCATACATTTTACAAGAGGGAGTTATTATATGTCAAGTGTAATCAGTGCCTGCAAAAGTTCAAGACTGAAGAAGAAAGGACTGCTCATAGTTGCAAGATGTGTTGCGCTAAATGTCACAAGTTATTCGACACTAAAAACAGATTTAACTCTCATGTCTGTAAAAGTAAGCTTAAAATTTCTCAATGTCAACCGTGCGGGAAGGTATTCCAACTTCCTAGTTCGCTCAAAACACATAAGTTTCGATGCAACACAAGAACCTTGTGCTACGTTTGTGGAAAAAGCGTTAGAAACATAACGCGACACTTGTCGACTCACTATCCAAATAAAAGACCAAATACAGTGTTTAAATGTGCTTCGTGTAACAAACAGTTTAGGTTTAAAGAAGGCTTAATAAGACATATTAATCAAGTACATTCGAATAATGTTCCTTTCCAATGTCAGTATTGTTCGAAAGGTTTTAAAAGCAAATGGAACTTGGATGTGCATGAGAGGATACACCATGGCGTTAGAGCTCACATTTGTAACATTTGCAATAAAGGATTTTTAGAAAAGAGCTATCTAAAGAAACATATGAAAGCTCATTTGCGCCAGCATGTCAAGTAA
- Protein Sequence
- MEQDSASKKQTKQPLITPKPTPLVYYINRGSKRCALINEGNSHRKVTKMPAQNTSIDLSSASPFEGSENLSPEVVKKICRLCLEEKEAMWPFFSVLTFDDGSSIDVLNIFQALTGENREKIENPNLPPYICERCLGLLSSANTFQQKYEESTRVLNEYLAKECAENSVESIKVVIDDQSKNQTAEGAENKNIDDGRLHNFEFISTEEITLHDTKNFSEVATRNIYTAKSECVVKPTDKGSAPPRETITEEFPTNLDKNSIQAKLHRCPICPKSFTAIELKKHCITHKAFKTYLKAAPKYNQRVKFYATPRTENVGLFNQEKIKHTCPFCHDEFDSEQFKNHIKEHRIEGNFPCNICNRIFLGINHLKMHQLSHKKEAPFKCKFCKKSFFLKRNYDFHLLSHSNNKELPFNCKDCDKTFSNPEHLKRHNFIHKNYMNYHTFYKRELLYVKCNQCLQKFKTEEERTAHSCKMCCAKCHKLFDTKNRFNSHVCKSKLKISQCQPCGKVFQLPSSLKTHKFRCNTRTLCYVCGKSVRNITRHLSTHYPNKRPNTVFKCASCNKQFRFKEGLIRHINQVHSNNVPFQCQYCSKGFKSKWNLDVHERIHHGVRAHICNICNKGFLEKSYLKKHMKAHLRQHVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -