Bpel029575.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:4877338-4879423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 9.3 8.3 6.0 1 23 378 400 378 400 0.99 2 10 0.51 45 6.1 3.4 1 23 405 427 405 427 0.95 3 10 0.00086 0.077 14.8 5.4 1 20 438 459 438 461 0.95 4 10 0.00012 0.011 17.5 2.2 1 23 468 493 468 493 0.96 5 10 0.00087 0.078 14.8 0.1 3 23 501 521 500 521 0.98 6 10 9.9e-05 0.0089 17.8 2.5 1 23 527 549 527 549 0.98 7 10 0.0026 0.23 13.3 0.9 1 23 555 577 555 577 0.96 8 10 3.7e-05 0.0033 19.1 0.6 3 23 585 605 583 605 0.97 9 10 0.23 20 7.2 0.8 2 23 613 632 612 632 0.90 10 10 0.00034 0.03 16.1 1.7 1 23 638 661 638 661 0.96
Sequence Information
- Coding Sequence
- ATGAATGAAAAGCAATACCTTCAATGTCCCGAAAGTGGAGCCTCACGAGGGTTCTCCACTCAATTCTCAATGGTGACGGGAACTTTTTCACCTATTGGCACTTTCAACGATGTTTACTCAGCCTTACTACCGCAAAATTCCACTGATAGAGGTCAAAATAGGCCCCCAGAGCTTCCCTATACACTTTCCGAGATACCTTGGGACACTCTGAAGTTGCCCGAAAAAATTGATCATCTTGAGATATCTAGTAAAGACTTAAGTCCTAGTAGCTATTGTAGtaatatagataatattttaTCAGAAAACCAGTATAATAGATATGATGGACACCAGTGGGGTGCAAGCACAAATAACTTTAATTATACACAAAAACCCAGTGATTACCCATCTTGTgcacatataaataaatactatgGTGACGCCAACACATCCTCTGCATACTGTAGTATACAAAAAGGACCCACAGAAGGAGAAATGTATAAAAGTTGTGCGTATTACAATGCAGATAATGGTACTTACCAAAATAAGCCTGGTGAGATATCTCATTATGGCAACTATTCTTCATACTATGACCCCAAGTTCTCTGATATTTCTCCTGGGCCAAGCTGCTATCTTGAAACTTCAACTGTATATGACACTGCCATAAAAACTAGAAGCACTGCTCTAAACTCAAAGGAATCATATGACTTAACTTATTTGACTCCTATAGATCAACAAACGGAAGCATCCAATGATGAAAGTGACATAATAGTGGAAGATTCTAGTTCAGACTGTAGCGAAGGACAAGAGAAACAGCTTGTTTATGAGATTACAAAATGTTTACTTTGCAATACTGTTTATACACCTCTAGGGCTCCAATTTTATGTACTAACATCAGAAAATCCTTTGACAATGTCTAGCCAAACACcagtcattaaaaaaatattggggaTTGTCGAGAATCATATTCGTGAAGACACAAACTACTTGTGTAATGACTGTCTGGGTTTGATAAACACAATTGATCATTTGCAGTTGAAGGTGGacaattttattaagaatttgttagataagtttaaaaaaagttgtttggagAATAACGTAGTGTATAAAGCTagggaaaaatcgaaaaatcaagccaaatttagaaaatataaatgtcGGCAGTGCAAGAAAATCTTGTGCCTGAAAACATACTTTGCAAAGCACATAAAAAGACACAAGTCCAGGGGCTATCTTTGTGAGATATGTGGAAAAACAGctcctacatttaaaaaactCAAATGTCACTTTAGAAAACACAGCAGGAAAGATATTCCTTTGATCACTTCTTTTAAGTGTTCAAGTGAGCACTGCAAGAAATTCTTCCGCACTAAATCGCATCTAAAGGAGCATGAGAACTTCTGCCTAGGGATATTGCCATTTAAATGTAACGGCCAGTACTGTGATAAAAAATTTGCCTCTGctacaaaacttaaaaatcacaCTAAATTAAAACATGACAAAAAATTCATAGCCATTTGCTCCATTTGTAATATAGGATTCGTAAAAGTCTCCGATTATAAAAGCCACATGATAACTCACAACACCGATAAAAAATTCTCCTGTGCAAAGTGTGATAAAAGTTACAAAACTCtaagcaatttaaattttcatctAAAAACTCACGAAAAAACACTTCCTTACACTTGTCCTGTATGTGACAAAGGCTTCATGCGTAAAGAATATCACGAAGCACACGTTAACAATCACAAGGGCATTAAAAACTTCGGATGTACTGTTTGCGATAAAAAGTTTGTATCACAAAAGAATTTAGATGCGCACTTAAAGTATCACGAGGGGACGGTGAAAACCAACAAGTGTAATATTTGTGGTAAAGTTATCACAAGTGGGTTTGAAGAGCATTTACGAACCCACTCGAATTTGAGGGAATTTGACTGTGACCTTTGTGATATGAAATTTAATACTAAGAATGCACTGGCTAAACATAAAAAAAGAAAGCATTTGAATGGGGAGAATGTTTGTAAAAGTTGA
- Protein Sequence
- MNEKQYLQCPESGASRGFSTQFSMVTGTFSPIGTFNDVYSALLPQNSTDRGQNRPPELPYTLSEIPWDTLKLPEKIDHLEISSKDLSPSSYCSNIDNILSENQYNRYDGHQWGASTNNFNYTQKPSDYPSCAHINKYYGDANTSSAYCSIQKGPTEGEMYKSCAYYNADNGTYQNKPGEISHYGNYSSYYDPKFSDISPGPSCYLETSTVYDTAIKTRSTALNSKESYDLTYLTPIDQQTEASNDESDIIVEDSSSDCSEGQEKQLVYEITKCLLCNTVYTPLGLQFYVLTSENPLTMSSQTPVIKKILGIVENHIREDTNYLCNDCLGLINTIDHLQLKVDNFIKNLLDKFKKSCLENNVVYKAREKSKNQAKFRKYKCRQCKKILCLKTYFAKHIKRHKSRGYLCEICGKTAPTFKKLKCHFRKHSRKDIPLITSFKCSSEHCKKFFRTKSHLKEHENFCLGILPFKCNGQYCDKKFASATKLKNHTKLKHDKKFIAICSICNIGFVKVSDYKSHMITHNTDKKFSCAKCDKSYKTLSNLNFHLKTHEKTLPYTCPVCDKGFMRKEYHEAHVNNHKGIKNFGCTVCDKKFVSQKNLDAHLKYHEGTVKTNKCNICGKVITSGFEEHLRTHSNLREFDCDLCDMKFNTKNALAKHKKRKHLNGENVCKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01239515;
- 90% Identity
- -
- 80% Identity
- -