Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022563.1:46839094-46847233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00013 0.012 17.4 5.1 1 23 31 56 31 56 0.96

2 11 0.0091 0.81 11.6 1.1 4 23 69 91 67 91 0.89

3 11 0.02 1.8 10.5 2.8 1 23 122 146 122 147 0.94

4 11 0.0017 0.15 13.9 3.9 1 23 153 178 153 178 0.96

5 11 0.0025 0.23 13.3 0.7 3 23 191 214 190 214 0.89

6 11 0.00023 0.02 16.6 1.0 3 23 268 291 267 291 0.89

7 11 3e-05 0.0027 19.4 1.1 3 23 350 373 348 373 0.89

8 11 0.5 45 6.1 2.3 1 19 407 427 407 432 0.92

9 11 0.0082 0.73 11.7 2.9 3 23 440 463 438 463 0.89

10 11 2.7e-05 0.0024 19.6 0.8 2 23 475 497 475 497 0.92

11 11 1.4 1.3e+02 4.7 0.3 1 11 502 512 502 516 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00013	0.012	17.4	5.1	1	23	31	56	31	56	0.96
2	11	0.0091	0.81	11.6	1.1	4	23	69	91	67	91	0.89
3	11	0.02	1.8	10.5	2.8	1	23	122	146	122	147	0.94
4	11	0.0017	0.15	13.9	3.9	1	23	153	178	153	178	0.96
5	11	0.0025	0.23	13.3	0.7	3	23	191	214	190	214	0.89
6	11	0.00023	0.02	16.6	1.0	3	23	268	291	267	291	0.89
7	11	3e-05	0.0027	19.4	1.1	3	23	350	373	348	373	0.89
8	11	0.5	45	6.1	2.3	1	19	407	427	407	432	0.92
9	11	0.0082	0.73	11.7	2.9	3	23	440	463	438	463	0.89
10	11	2.7e-05	0.0024	19.6	0.8	2	23	475	497	475	497	0.92
11	11	1.4	1.3e+02	4.7	0.3	1	11	502	512	502	516	0.86

Sequence Information

Coding Sequence: ATGTACAcccttgaaaaaaatgaaagcggcgaaaGCGTTTCTGATCGGCTGCAGGAGCATATATTTGCACGCCAAGAAGCAGGACGGCCGTTTAAATGTGATTTTGAAGAATGCGACAAGAGTTATAGCCAGAAGCATCATTTAATTAGACATAAAATAAGGAGCCATTCCCTAGAAGATCAACAGCAAGAGCAAGTCCTTTGCGGGAGAGATGGCTGTAATAAAACGTACTGTAATAAATACGTTCTTAAACAGCATATCGACAAAGCCCATATGCCAGTAGCGTCTCAAATGAACGAGAATGACTGTTCTGAAAACGTCGCTAATCCACCAGTTAAAAAGAAGTCCGATATTGAAAAACGGCATAAATGTAACCGGCCTGGTTGCGACGCCACGTTTTATCGCCCTTATAGACTGAAATACCACGAACTAGTTCACCATGGCGGCGAGAAACCTTTTAAATGCGATTTCCCGGAATGTACTCACAACTATACCAGTAAAAGTCATTTGGAAAGACATAGAATCGTCAGCCATTTTCCAGATAAACTTGTTCCTGATGCGTTGGCGATGTGCGGGGTAAAAGGTTGCggtaaaatctataaaaataaattcggCCTCAAAAAACATACTGCAAAGAAACATGGAAATGGTTCCTCTTTGGACCATACTATTAAGATTGAAGATACGGTTAGCGAAGAAGAAATAAAAGTTGAAGATAGTGATGGTGATGCTAGTACCGACGAACCGTATAAGTTACGAGTAAGAGGAATCGTTAGCCTTGCTCCTGATGCTTTGGCGATGTGCGAGGTAAAAGATTGCGGTAAAATCTATACAAATAAATTCAACCTCAAAAAGCATACAGCAAACAAACATGGAGATGGTCCTTCTTTGCACCATACCATTAAGACTGAAGATACGGTTAGCGAAGAAGAAATAAAAGTTGAAGCTGGTGATGGTTATGCTGGTACGGACGAACCGTATACATTAGGAGTAGGAAGAATCGTTAGCCATATTCCAGAAAAAGTTGTTCCTGATGCGTTGCTGATGTGCGAGGTAAAAGATTGCGGTAAAACCTATAAAACTAAACGCAACCTCAAAAGACATACAGCGCTCAAACATGCAGATGGTTCCTCTTTGAACCGTACCATTAAGATTGAAGATACGGCTGgcgaaaaagaaataaaagttgAAGCTGGTGATGCTGGTACCGACGAACCTTATAAATGTAGAGTAGGAGATTGTGCAGCCGCATTTACTAGCACCTATCATTTGAAAAGCCATTGCTTGAATGTTCATAGTAACGATAGGCCGTTTCTATGCGACTATAAAACTTGCGACAAAAGCTATAGGAATGTAGCGCATTTAACCAGACACAAAACTTCAAGTCACCGGTCAGAAGAAACGGTTTTAACGAAAGAAGCTGTTTGCGGAGATTGCGGAAGAATTTTTTCCAGCAAATACAGCTTGAAAAAACATAAAGTTAGAAGTCATACGAATCTCCCGTTTGCGTGTACGGAGTGCGACGAAAAATTCAAACTGGATCATTTGGGTATTCTTAAATCGGAAGTGGAGTATGCTATTAAGACCGCAAAAAACAACAAAGCTGTAGGACCCGACAATATTCCGATAGAAGTGTGGAAGGCATTAAACGACAAAAACCTGACCAGCCTTACAGAATTTctaaatgtagtatatgaaacaGGTGAAATTCCAAGAGAGTGGCTTAAATCAGTGTTTATTCCGCTACCTAAAAAAAACAACCCTAAATCATGTGACGAGTATAGGATGATCAGTCTGATGAGTCACACGTTGAAAATCCTCTTAAAAATTATCCAACGGAGAATATACCGCAAATGTGAGGAACAGTTGGATGGGATGCAGTTTGGTTTTAGAGAGGGATTAGGAACTAGAGCGGCTCTGTTCGCTTTGAAAGTAATGCTGCAGAAGTGCAGAGagtacaataaaaatgtattcgTCTGCTTCATCGACTTCCAAAAGGCCTTTGATCGAGTTCAACACGACAAACTTATCGAGAAcctaaaaaATATGGAGACGAATGAAATCAAAATCCAGAAAGGCGTCCGACAAGGCTGCGTCCTGTCCCATGCAACTGTTCAATTGTACTCCCAGTTTGTGTTTCGAAAGGCGCTGGAAGAGAGAGGAGAAGGGGCGAATATTGGAGGGACACTAATTAATAATCTTAGATTCGCGGACGATACTGCAATAATGGCGGAAAGCGCAGAAGAGCTACAAACACTATTAGAGAGAATTAACCAAGCGTGCGAAGAAGTAGGACTTACCATTAACatcgaaaaaaaacgaaattcatgGTAA
Protein Sequence: MYTLEKNESGESVSDRLQEHIFARQEAGRPFKCDFEECDKSYSQKHHLIRHKIRSHSLEDQQQEQVLCGRDGCNKTYCNKYVLKQHIDKAHMPVASQMNENDCSENVANPPVKKKSDIEKRHKCNRPGCDATFYRPYRLKYHELVHHGGEKPFKCDFPECTHNYTSKSHLERHRIVSHFPDKLVPDALAMCGVKGCGKIYKNKFGLKKHTAKKHGNGSSLDHTIKIEDTVSEEEIKVEDSDGDASTDEPYKLRVRGIVSLAPDALAMCEVKDCGKIYTNKFNLKKHTANKHGDGPSLHHTIKTEDTVSEEEIKVEAGDGYAGTDEPYTLGVGRIVSHIPEKVVPDALLMCEVKDCGKTYKTKRNLKRHTALKHADGSSLNRTIKIEDTAGEKEIKVEAGDAGTDEPYKCRVGDCAAAFTSTYHLKSHCLNVHSNDRPFLCDYKTCDKSYRNVAHLTRHKTSSHRSEETVLTKEAVCGDCGRIFSSKYSLKKHKVRSHTNLPFACTECDEKFKLDHLGILKSEVEYAIKTAKNNKAVGPDNIPIEVWKALNDKNLTSLTEFLNVVYETGEIPREWLKSVFIPLPKKNNPKSCDEYRMISLMSHTLKILLKIIQRRIYRKCEEQLDGMQFGFREGLGTRAALFALKVMLQKCREYNKNVFVCFIDFQKAFDRVQHDKLIENLKNMETNEIKIQKGVRQGCVLSHATVQLYSQFVFRKALEERGEGANIGGTLINNLRFADDTAIMAESAEELQTLLERINQACEEVGLTINIEKKRNSW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -