Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022564.1:11265396-11284847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9 2.6e+02 3.7 0.1 1 9 279 287 279 298 0.84

2 9 0.00045 0.041 15.7 0.3 2 23 310 332 309 332 0.97

3 9 0.0032 0.29 13.0 6.3 1 23 347 369 347 369 0.98

4 9 1.4e-05 0.0013 20.4 3.1 1 23 374 396 374 396 0.98

5 9 7.8e-06 0.00069 21.2 0.7 2 23 404 425 403 425 0.97

6 9 0.00019 0.017 16.8 1.4 2 23 432 453 431 453 0.97

7 9 0.0003 0.027 16.3 1.0 3 23 461 481 459 481 0.97

8 9 6.3e-06 0.00057 21.5 3.5 1 23 487 509 487 509 0.99

9 9 0.93 83 5.3 0.5 1 23 513 536 513 536 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9	2.6e+02	3.7	0.1	1	9	279	287	279	298	0.84
2	9	0.00045	0.041	15.7	0.3	2	23	310	332	309	332	0.97
3	9	0.0032	0.29	13.0	6.3	1	23	347	369	347	369	0.98
4	9	1.4e-05	0.0013	20.4	3.1	1	23	374	396	374	396	0.98
5	9	7.8e-06	0.00069	21.2	0.7	2	23	404	425	403	425	0.97
6	9	0.00019	0.017	16.8	1.4	2	23	432	453	431	453	0.97
7	9	0.0003	0.027	16.3	1.0	3	23	461	481	459	481	0.97
8	9	6.3e-06	0.00057	21.5	3.5	1	23	487	509	487	509	0.99
9	9	0.93	83	5.3	0.5	1	23	513	536	513	536	0.96

Sequence Information

Coding Sequence: ATGAGATATACCAAAAGATATAACAGATTTACTTTTCAAACGAATTGTCGGATATGTTTAACCCAAAGCGTAACAAAGATGATTCCTTTAGATGCTTCGCTAAAAGGTGATATAATGCCGAAACCACTGATCTATGAAGCAATGGAATTTGTTATGTCGGAAAAAATAGACTTGAGAGACGTATATCCGCAAGGTTTGTGTGCAGTGTGTGTTCAGCTAGTTAAGAtttcatatgatttaaaaattcaGTATCGAGAGTCTAGGAAGAAACTTAAAGGGCAGTTAGGTGACCTTAGTGATATAGTCGAATTCGACCCGAAAACAGACGAGAATAAAACTTCGGTGGACATTCTGGTTGGATCGGAACGGTTCAACATTCACGACATATTCATTGTGGAAGACGACAGTCACGATGAGGAAGTGTTTGAAGGGTTCTTGAATAATTTGGGCAAATCCATCAGCGCATCGTTCGTTGAAAAAGGATATAAGAAGCCCAAGCCTGTCCTTGAAGTCCCGTCtttagttattgaaaaaatcagcCAAGATTTACATACAAATGGAAATAAAGGTGATCCTCAAAACGACGAGGAAGTTTATGCAGAAAATCCCTATGAAGATCAACTTGAGGAACAGGAAGAAACCGTAGGAGATAACGGAAAAGAAGATGAAAATATTGCCGATAACGAGGAAGAAGGCGACAATATTGCTGCCGATAGTGACGAAGACGGAGATACGATTTTTATTAATACCGTGGCGAATGAAGAAATGATGAATAAGTTCATGACCAACACTGAAAATGACAAAGAACTGTTAGCGTCAGCGAGGAAATTGAAATACAAATGCCCATTTTGTGACAGACCGATGGTTTCTCTGAACCGAGTCAAGTTGCACACAAGTGGGGCGTGTAAGAAGAATAAGTTGAATTTGAAATGTTACGTATGTCGCGTAGTTTTCGGAAATCGAAAGCAACTGTTGGCACACCTGCGAACGGAACACTTAATGAAACTACAGAATCAGATTCCCGAAGATCCTAGCGAGCATAAATGTCACCTTTGCGGGAAGGTTCTCAACAGCCATGGAAATCTCTTCTACCATCTAAGTAAACATTTAGGAAAACGATATAGCTGCGAGATATGTGACAAGACGTTCTACACGAGAAGTCAAACGAGGAGTCACAGACAGACGCACAACCGCAACGACACTCTGGTCGTGTGTCCCGTTTGCGGAAAAGGCTTTCACTACCGCAGTGGCCTGTTCTACCACATGAAGACGCACACGAACGAGAGGAACATACAATGTAGCTATTGTCCCAGAAGATTCTACACTAGAAACTCCGTGAAAAGGCACGAGTTGACCCACACCGGTGCACGACCGTACGGTTGCACCTACTGTGAGAAAGCATTCCGATCGCACGGCGAAGTAAAGAAGCACATATTGTTACACACCGGCGAACGTCCGTACAAGTGCAAGTATTGCCAATTGGGTTTTACACAGCTACATAACCTCAAAGTTCATCTGATGACGCATCCGGGAGAGTACCAGTGCGCGCAATGCGCGAAAGGATTTCTCGAAGAGGATACTTTAAGgtTCCACATGCGTATGAAACACGGAGAAGGTAAGGAGACCCAAAAAGCCATGCAAAATGAAGACTACTCGGAGGAGGAGGAAGTTGAAAATTTAGAACAAGAAGACGAGTGCCACGAGGACGGGATGCACGAAGAGGGAGACATTGAAGGTCGTGGCGAGGCAATGCCAGAAGAAACTTACTTTTATGCCGAAGAGTATGTCGATAATGAACAGTCGATCGTGTCGACGTATGACGTTGCCGATGATGTTTTGGTTGAAACGGTTGAAGaagatttgtaa
Protein Sequence: MRYTKRYNRFTFQTNCRICLTQSVTKMIPLDASLKGDIMPKPLIYEAMEFVMSEKIDLRDVYPQGLCAVCVQLVKISYDLKIQYRESRKKLKGQLGDLSDIVEFDPKTDENKTSVDILVGSERFNIHDIFIVEDDSHDEEVFEGFLNNLGKSISASFVEKGYKKPKPVLEVPSLVIEKISQDLHTNGNKGDPQNDEEVYAENPYEDQLEEQEETVGDNGKEDENIADNEEEGDNIAADSDEDGDTIFINTVANEEMMNKFMTNTENDKELLASARKLKYKCPFCDRPMVSLNRVKLHTSGACKKNKLNLKCYVCRVVFGNRKQLLAHLRTEHLMKLQNQIPEDPSEHKCHLCGKVLNSHGNLFYHLSKHLGKRYSCEICDKTFYTRSQTRSHRQTHNRNDTLVVCPVCGKGFHYRSGLFYHMKTHTNERNIQCSYCPRRFYTRNSVKRHELTHTGARPYGCTYCEKAFRSHGEVKKHILLHTGERPYKCKYCQLGFTQLHNLKVHLMTHPGEYQCAQCAKGFLEEDTLRFHMRMKHGEGKETQKAMQNEDYSEEEEVENLEQEDECHEDGMHEEGDIEGRGEAMPEETYFYAEEYVDNEQSIVSTYDVADDVLVETVEEDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -