Bpel032885.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022563.1:7642294-7653420[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 15 7.6 1.1 3 20 290 307 288 309 0.92 2 13 6 5.4e+02 2.7 1.4 2 23 442 463 441 463 0.94 3 13 0.00017 0.015 17.1 4.0 1 23 469 491 469 491 0.98 4 13 8.5e-06 0.00076 21.1 1.1 2 23 496 517 495 517 0.97 5 13 7.6 6.8e+02 2.4 1.5 2 12 567 577 567 588 0.68 6 13 2.2e-07 2e-05 26.1 3.2 3 23 600 620 599 620 0.99 7 13 0.09 8.1 8.5 0.6 1 23 626 648 626 648 0.97 8 13 6.5e-07 5.9e-05 24.6 0.4 1 23 654 676 654 676 0.98 9 13 3.2e-06 0.00029 22.4 2.8 2 23 682 703 682 703 0.98 10 13 2.6e-05 0.0023 19.6 6.1 1 23 709 731 709 731 0.98 11 13 0.0014 0.13 14.1 3.1 1 23 737 759 737 759 0.98 12 13 0.0018 0.16 13.8 2.2 1 23 765 787 765 787 0.97 13 13 0.0018 0.16 13.8 4.7 1 23 798 821 798 821 0.96
Sequence Information
- Coding Sequence
- ATGGACCAGGAAAACGACGATAATTTGGTCAAAATAACAGATATTTGTCGAGCCTGTTTAACTAGAGTGGAGAGCATGAAATTCTTGCTAGTGGACAGCGAAGAAATTCTTAATTTATTATCAAAGTTCGCTTCTGTCGCTAATTTAGAGATAGAAATTGGCTTTAAATACCCTTCATACCTCTGTGCTAGCTGTGAAGAAAAAATTCTTAGTTCCTATGAGTTTCAACAGCAATGCCGGAAATCAAATGACTTGGTTAACGAATACCTCGCAGTATTTGAAAAGCAAGATGCAAATCATACCGAACCAGAGTCAGAAGTTATTTTAACCAATCTAAATACATCTGAAGACCTAAATGCAGTTCAAGAGCTACAAAATACTACTCAACCACTATATGAAGAAATTTCCAACCCGCCGTGTGAAGATAACGAAGAAGATAAAACAATATATGATGAAACATTTCACAATAATTTAACCCAAGCTATTTTAcaattaaaggaaaaatataGGGGTGATAATGTATGTGTGTTTTGTGAATTTGAAGCAACAAGCCACGCTTCATTGTCTGATCATGTATCTAGGATGCACAAGGAATCCATAGATACCTGGTGTTCAATATGTAACAGTATATGTCTTAATATGACAGCTCACTTGGAGGAAGAACATAAACATGATTTTATGTGTCAATTTTGTCAGACGCAATCTTCTTCTCTTAATTCTACAATTGATCATTTATATAGCCACCAAGCTTCTAGTAAACATACACCAGGCACAGCTGAGACAGCTCCACAGAGAAATGAAAGCATCTACACTCAAACATTCGACAACCAAGACATGTTAGAAGCTGATTCTGAAGAACATGTCATTTGCCAATTTTGCAGTAAACTATTTCCGACAAGCAATGAATTGGAAACACATAAATGTAACAGAGAAAAAAGGAAAGGAAACAAAGACTTAGTTGAAGGAATAAAGGTGGAAGGGGAGAAGTGTAAAACATTACTAGCAGAAGATACATATGACCCACCAGATGAATTCAAGAACTTTTCCCCAAAAGaagttccactcagaaataaaACTTGCCAAAAAATGAGATTGAAGCAATATTCTGTGGAAGATGTGAACAAAGCTATCGGCATATTTAAGGAAAAGTTCTACAAACATGTTAATTGCATTTTTTGTACTTTCACTGCCATTACGAATAGAAGTCTGTCTGTGCACGTAACTAGAGTGCATAGAGATTTTAAAGACACCTGGTGTTCATCTTGCAATAAAGTTATTGAGAATCAAGCTAGTCATAACAGAGAAGTACATTATGAAGATCTTAGATGTCCTTTTtgcagaaaaatcaaaaataacatGGGTCATTTCATGGAACATTTGGCCAGTCACTCTGCCGAGAGGTTTCACAAGTGTAACATCTGCCTCAAATCATTTATATCGCCCAGACATCTGAGGATTCACAAAGAAACGCACAAATCACAGCTCAAGTGTGGCGTATGTAAAAAAACGTTCGTGCAAGCGCTACAATTAAAGCGTCACCTTAAAACCCATCAAAGTCCCAACGGAAGCAACGCAGACATTAGAAGCGATTCTACAGAAATGGACTTAGTCAAAGACGAAAGCAATGAGAATGATAAAATTGGAAGTTGTAGGAGCGAGTGCGAGGAGACTGAAGACGAACCAGCGAAGCCTCACAACTACTGTAAAGATTGCAATAAAAAAGTGAGAAGTTTACTAAGCCATTATCTTCAGCATCACAATAAATCGAAATCGGAAAACACAGACAGACAGAATTTATGTCCACATTGCGGCAAACGATTTAAGACACGATCGAAACTGACTGTGCATATACGAACGCATACAGGGGAATCACCGTATAAATGTCAATACTGCGACAAATGGGTGAAAACGAGAAATATCCTAATCGTCCATGAACGCACTCATACCGGGGAAAAACCATACATGTGTACTATTTGTGGAAAGAGTTTCGCCCAGTCTAGTGTATTGAACACTCACACCAGGATACACACGGGGAGGCCCGAGCAATGTACAATTTGCGAAAAAAGGTTTTGTCGTCCCGCAGAGTTGAGATTGCATATGAGAAAACATACAGGTGAGAAACCGTATATCTGTCATCATTGCGGGCTAGGCTTTAAGCAGAAAAGCCACCTCGTGGAACACACCAAAACTCATAACGATGACAGACCGTACCAGTGCGAATTTTGTGAGAAGGCGTTTAAAAACCGGGGAACTCTCAAGTGTCATCTTCAGATACATTCCGGCCAAAAACCGTTCAAATGTTCCCAATGCGCCTATGCTTGTAGACAACCCTATAGTCTAACCCAGCACATGGTTCAACATGACAATGACAAGCCTCGATTGGACTATCCTCATAAGTGTCAAATATGTCAGAGGAATTTCGCTACGACAGCCCATTTGACAGCTCATTATACCAGgtttCATCCAGACTTAAAAGTTAACTCCTCAGAGACCTTTGAACGACCGCCAATACACGCTAATCAAATAATCATCGCCGACACTGTCATTGATCACGAAATTAATCAAGAAAATAATTACCAGATCTCACAGGCAACATCAATAGTAGACTCTAATCAAATTCAATTGGTCGAATCGGATGGAAATGTCGATACGATGATTATTCAAACGGAGATTCAAGATGGGGGACGGATAAAATTCGAACCGATTCAGATACATATTTCAACGTTGCAAGAGTTATAA
- Protein Sequence
- MDQENDDNLVKITDICRACLTRVESMKFLLVDSEEILNLLSKFASVANLEIEIGFKYPSYLCASCEEKILSSYEFQQQCRKSNDLVNEYLAVFEKQDANHTEPESEVILTNLNTSEDLNAVQELQNTTQPLYEEISNPPCEDNEEDKTIYDETFHNNLTQAILQLKEKYRGDNVCVFCEFEATSHASLSDHVSRMHKESIDTWCSICNSICLNMTAHLEEEHKHDFMCQFCQTQSSSLNSTIDHLYSHQASSKHTPGTAETAPQRNESIYTQTFDNQDMLEADSEEHVICQFCSKLFPTSNELETHKCNREKRKGNKDLVEGIKVEGEKCKTLLAEDTYDPPDEFKNFSPKEVPLRNKTCQKMRLKQYSVEDVNKAIGIFKEKFYKHVNCIFCTFTAITNRSLSVHVTRVHRDFKDTWCSSCNKVIENQASHNREVHYEDLRCPFCRKIKNNMGHFMEHLASHSAERFHKCNICLKSFISPRHLRIHKETHKSQLKCGVCKKTFVQALQLKRHLKTHQSPNGSNADIRSDSTEMDLVKDESNENDKIGSCRSECEETEDEPAKPHNYCKDCNKKVRSLLSHYLQHHNKSKSENTDRQNLCPHCGKRFKTRSKLTVHIRTHTGESPYKCQYCDKWVKTRNILIVHERTHTGEKPYMCTICGKSFAQSSVLNTHTRIHTGRPEQCTICEKRFCRPAELRLHMRKHTGEKPYICHHCGLGFKQKSHLVEHTKTHNDDRPYQCEFCEKAFKNRGTLKCHLQIHSGQKPFKCSQCAYACRQPYSLTQHMVQHDNDKPRLDYPHKCQICQRNFATTAHLTAHYTRFHPDLKVNSSETFERPPIHANQIIIADTVIDHEINQENNYQISQATSIVDSNQIQLVESDGNVDTMIIQTEIQDGGRIKFEPIQIHISTLQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -