Bpel029971.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:12302113-12304620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.032 2.9 9.9 0.1 2 22 11 31 10 31 0.95 2 14 0.00048 0.043 15.6 2.0 1 23 41 63 41 63 0.96 3 14 0.00026 0.023 16.4 0.2 1 23 70 93 70 93 0.94 4 14 2.4e-06 0.00022 22.8 0.6 1 23 136 159 136 159 0.93 5 14 0.11 9.6 8.2 0.3 1 22 204 225 204 227 0.89 6 14 1.1 96 5.1 0.1 3 23 248 269 248 269 0.93 7 14 0.0041 0.37 12.7 0.5 2 23 540 562 539 562 0.96 8 14 0.0075 0.68 11.8 0.1 3 23 572 593 570 593 0.95 9 14 4.4e-05 0.0039 18.9 2.7 3 23 629 649 627 650 0.94 10 14 0.12 10 8.1 0.1 2 22 659 681 658 683 0.86 11 14 0.0021 0.19 13.6 0.2 2 23 691 712 690 712 0.96 12 14 4.4e-05 0.0039 18.9 0.9 1 23 721 743 721 743 0.98 13 14 0.0015 0.13 14.1 2.1 3 23 751 771 749 771 0.94 14 14 9e-05 0.008 17.9 2.9 1 23 777 800 777 800 0.97
Sequence Information
- Coding Sequence
- ATGCCGATAGGTGCCTTTAATTCAATGTTAGTATGCAAGCTGTGTTCTCTTGCTTCTACATCACAGAAGTCGTTGGTTGATCACATGAAGACGTGTCCGGAGCAAGGCAGGAATAATTCATATTATTGCATAATATGTACGTACGATTTTACCGACCGATCTCAGTTTAATCGCCATATTCGTTACCATAAAGAAAGATTATTTCGCTATAAATGCGATCTATGCCCCGAAAGTTTTCGTCGCAAGGGTCTTGTTATTCAACATCTTGCTTTGAAGCACAACTACATCGCCGAGAATgttagaaaatcaaaaaaagtgGATGAATATAGAAAAATTTGGTTGGACATGCATCCGCCGATGAAAGTAAGAAATGTTTTCAGCGGAAGCCACGAAATTGTTGTTAATTTTTCATGCCCTCAATGTGGTAAAAATTTCAACAGATTATCTGATCTAAACAAACATGTCACGAACGTCCATGCGAATGCATATATTGAGGACACTGTTTCTTGCTCGGAATCTCGAGCAATTTTTAATGAACATCTCAGCAGCATTCATGGGTCCATAGACAATCGACGTGATTCCAAAGAAAAAACAATGCATGTGAACAATTTCCCCTGTCTTGAATGTGATATAGTTTTTCTCACTAATCGTAGTCTTTGTAACCATGTCGGATTAGCTCACAGACAATTAGATGACACACTTGTTTCCGTGGAGAATGATGACAATACCAGCAACATTGGTTGTTCATATTGCGGAGCATTTTTCAAGGAAATAAATATCCTAAACGACCATGTCAGAGTTGATCATCAAAACATCGATGAAATAAGTGTTTCAAAGTCTGTTTCCCCTTGCCCAACAAACTTGCCgtgccgaacaaaccccaacatTTTTATACATAATAACGACCTTCGCAACCACTTAGAAGATGCTAGAAGTATTACCAATAATATTTCGGAAGTTTTTCCTAATCGTGAAAATGGTTTTAACGGAGAAAATAGTTTCAACGAGCATGCCAGAGAGGATGACTCAGATAAAACAGGTGCTTTTGAAAATGCGCTCCGTATTATTGACGTTGCTGCTGGTAGAGAttgcgaaaaactttttaacgatAAGAGCAGACATTTCTCCGAAGATGTACATAAAGAGGCAGATAATAGTCCTAAAGAAGTCAATGACGTCACGCAAGTTAGTTGcctcgatctcaaaaaaagttTAAACGATAAAAATAGCTCTAGCGACCATGGAGGTAAAGCAAGCTATTTTGATCACACAAACAATGTTGCGGAAATTTTCGCTTCTTCAAATTGCGAAAATGTTTTCAACGAAAGAATAATCGACCTTACCGATCACATCAACCATGCGCATAAAGCTATAGAGGGTGCTGAAGAAATAAATTACGTTTCTCGCGAGAAAAATGACTGTGCTATACTTGAAGGTGAACGCTTAGCTAACACTATTAAATGCACAAGTGTTCTTGAAGATACacacacaaataaaaaaatatgtcctTGCGGCAATTGCGAAAAGACAATAAACAGCATCGACATTCATGTTCAGAGTAATCATATACGCATAGGGAATATAACTATTCCTGAAGATACAGGGATGAAGACGTTGCAATGCCCCGAATGTGACAACATTTTTGGCACAAAATTCCGATTTTTCAAACACATAGAAACCGATCACATGAGTATTCAGGACAAAGAGAGTATATGTAAAGAGTGTGAGCAAGTATTCCCAACCTATGTCACTTTTATAGAGCATATTATCAAAATgcacaaagaaattaaaaatattgaacgaTGCATTATTTGTAATATGACCTACACAGGTTCGTTGGAAGCGCACAAAAATTTGTTACACCAGAAACTTTTTCGCATATTCTGCTCCAAATGCTCTAAGGGATTTTATTCTCCGGAAAATTTGAAGAGACACATGACTAACCATCATAAAATACGCGAGATCGTTCGTCTTCCGTGCACTGAAGATGGATGCGGAAAATTATTTACCAGCAGAAACGCGTTTTTGTACCATATAGGGGCAGTACATCTGAAAGCAGACTTTAAGGTGTCCTGTGATGAATGTGGGAGAACAATGACAGATCCAGGCAAATTCAAGAACCATGTTAGACTGCACAAGAAACGCTTACGTGCGAAAACGTATCAATGCGGAAAATGTCATAAAATAGTAACCTCGAAGAGTAGTTTAGAAGATCACTTACTGATTCACACGGGCGAAAGACCGATTATTTGTGAGAGGTGCGGAAAGAGTTTTCATACTATTAAACATCTTAGGACGCACGTGGTGGTGCATACGAAGGAGAAGCCTTTCCCCTGTAAATATTGCGATAAAAGATATACTCAGCGCGCCCCAGTCACTCGTCATATGCGCCTTTGCCACCCTGAGATGGTTAAAAACTCTGGCAAACAAAAATCGAATAAGGATGATAGGAAAACTGATACTGATCAAGGACGTAAGaaaaatgaagatgataatgtgGAAGCATAA
- Protein Sequence
- MPIGAFNSMLVCKLCSLASTSQKSLVDHMKTCPEQGRNNSYYCIICTYDFTDRSQFNRHIRYHKERLFRYKCDLCPESFRRKGLVIQHLALKHNYIAENVRKSKKVDEYRKIWLDMHPPMKVRNVFSGSHEIVVNFSCPQCGKNFNRLSDLNKHVTNVHANAYIEDTVSCSESRAIFNEHLSSIHGSIDNRRDSKEKTMHVNNFPCLECDIVFLTNRSLCNHVGLAHRQLDDTLVSVENDDNTSNIGCSYCGAFFKEINILNDHVRVDHQNIDEISVSKSVSPCPTNLPCRTNPNIFIHNNDLRNHLEDARSITNNISEVFPNRENGFNGENSFNEHAREDDSDKTGAFENALRIIDVAAGRDCEKLFNDKSRHFSEDVHKEADNSPKEVNDVTQVSCLDLKKSLNDKNSSSDHGGKASYFDHTNNVAEIFASSNCENVFNERIIDLTDHINHAHKAIEGAEEINYVSREKNDCAILEGERLANTIKCTSVLEDTHTNKKICPCGNCEKTINSIDIHVQSNHIRIGNITIPEDTGMKTLQCPECDNIFGTKFRFFKHIETDHMSIQDKESICKECEQVFPTYVTFIEHIIKMHKEIKNIERCIICNMTYTGSLEAHKNLLHQKLFRIFCSKCSKGFYSPENLKRHMTNHHKIREIVRLPCTEDGCGKLFTSRNAFLYHIGAVHLKADFKVSCDECGRTMTDPGKFKNHVRLHKKRLRAKTYQCGKCHKIVTSKSSLEDHLLIHTGERPIICERCGKSFHTIKHLRTHVVVHTKEKPFPCKYCDKRYTQRAPVTRHMRLCHPEMVKNSGKQKSNKDDRKTDTDQGRKKNEDDNVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -