Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022558.1:79809430-79814340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.7 1.6e+02 4.4 0.2 5 23 202 219 200 219 0.90

2 10 1.2e-05 0.0011 20.6 1.6 3 23 227 247 225 247 0.98

3 10 0.033 3 9.8 0.1 1 23 253 276 253 276 0.90

4 10 3.9e-06 0.00035 22.2 2.3 3 23 284 305 283 305 0.96

5 10 3.1e-05 0.0028 19.4 0.4 1 23 318 340 318 340 0.98

6 10 0.001 0.094 14.5 0.1 1 23 346 368 346 368 0.96

7 10 0.00012 0.01 17.6 1.2 1 23 374 396 374 396 0.97

8 10 5.6e-05 0.005 18.5 3.5 2 23 403 425 402 425 0.93

9 10 9.4e-06 0.00084 21.0 4.9 1 23 431 453 431 453 0.99

10 10 6.6e-05 0.0059 18.3 1.2 1 23 459 481 459 481 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.7	1.6e+02	4.4	0.2	5	23	202	219	200	219	0.90
2	10	1.2e-05	0.0011	20.6	1.6	3	23	227	247	225	247	0.98
3	10	0.033	3	9.8	0.1	1	23	253	276	253	276	0.90
4	10	3.9e-06	0.00035	22.2	2.3	3	23	284	305	283	305	0.96
5	10	3.1e-05	0.0028	19.4	0.4	1	23	318	340	318	340	0.98
6	10	0.001	0.094	14.5	0.1	1	23	346	368	346	368	0.96
7	10	0.00012	0.01	17.6	1.2	1	23	374	396	374	396	0.97
8	10	5.6e-05	0.005	18.5	3.5	2	23	403	425	402	425	0.93
9	10	9.4e-06	0.00084	21.0	4.9	1	23	431	453	431	453	0.99
10	10	6.6e-05	0.0059	18.3	1.2	1	23	459	481	459	481	0.95

Sequence Information

Coding Sequence: ATGAGAAATTTTTCAGCTGAAGACCTGCCGAAGCTCTGCAGATCTTGTTTATGTGAGGTCCACGgtgattatttttctttaagaggTTACTATTTAAACAGAAAAGTtgtggatatttataaaaatgccACTTCTATTGAGATTGATGATGAAGACAACCTACCAAAAAAGCTGTGTGCTCCATGCTATAACCATATAATCAAGTTTGATctgtttaaaaatcaaattctGGAGTCTGAGAGACAATTGACTGAATACATACATGGACTTTTGTATAAAAGTGACATTGACATTGAAGATGTTGTCAAATCTGAATTGCCGAGTGTGGATAACCAACTCGAGTGCAGCTGGAATCAATATAATGAGCAGGGTTTTGATCAGATTAGCGATTCTGAGGATGAGATTCCTTTATTAGACAGACTGAAGAATGAGACTGAGAACTTAgaaattaaaaatgaaacggaGAATAAGCCCAAAATAACTAATTCCGATTTGAAAGAAAATTGCAAGCAAGTCATATCAGATGAGCCAGAGAATAAAGCGAAATTAAAACAGAAGaaacaatttaagaaaaaaggGAAGAAAAGACATGAAAGGCCCAAagAATGTGGAAAAGTTCtctttacctataaaatggataaCCACATGAGGACCCATACTAAAGAAAGACCATACGGATGTGAAAAATGTGGTGCTCATTTTTCCGAAAGGAGTAATCTCAATAGACATGTAAAAACTCATGGAAGTGACAGGCCTTATAAGTGTGAAATATGTGAAAAAgGGTTTCTGAGACCGTCAAGCAGAGCAATACATGAAGTCACTGCCCATAGTTCAGAAAGAAATGTACTCTGTCCGCTCTGTGGTAAAACCTTTAAacatcaatattttctaaataaacatATGTCAAATGTACATAATACGGGTGAAAAAGTTAAGGTTTATGGGCCGGGGTATCCATGTCCGATTTGTGGTAATCTTTATAGGACAAAGTCGAGTTTAACAGTCCATAAAATGAAGCATGAACAACCGAAGGGATTCCTATGCAATATTTGTGGAAACGGATACTCGACAAAGGCAGTTCTGGACAACCATCAGCGAGTGCAtactggggaaaaaaattacactTGCGATATTTGTAACAAAAAGTTTAGATTCATCACTACGCTCAAAACGCATGCGTTGGTTCACAGTGGCGAGAAACCGTTGTCCTGTCCGATCTGTAGCAAACAGTTCAGGCAACATTCACACTTAAACACTCATGTAAAAGGGCAGCATTCCACCAATCGTCCATACCAGTGCAGTTATTGTTTGAAAACATTTAAACAAAGttgtaATTTGACGGTACATACAAGAATCCACACTGGCGAAACACCGTATCTCTGCGATATATGTCAAAAAGGGTTTTATGACTCGAGCAGCATGAAAAAACACAGGAAAGGCCACTTGGAGAAAAGTAGTCTGGCAGCAGCGGCATGGGATAAAGTTGACGCCATTGAAGTCGGTGTAAAACTTGAAGATGTATAA
Protein Sequence: MRNFSAEDLPKLCRSCLCEVHGDYFSLRGYYLNRKVVDIYKNATSIEIDDEDNLPKKLCAPCYNHIIKFDLFKNQILESERQLTEYIHGLLYKSDIDIEDVVKSELPSVDNQLECSWNQYNEQGFDQISDSEDEIPLLDRLKNETENLEIKNETENKPKITNSDLKENCKQVISDEPENKAKLKQKKQFKKKGKKRHERPKECGKVLFTYKMDNHMRTHTKERPYGCEKCGAHFSERSNLNRHVKTHGSDRPYKCEICEKGFLRPSSRAIHEVTAHSSERNVLCPLCGKTFKHQYFLNKHMSNVHNTGEKVKVYGPGYPCPICGNLYRTKSSLTVHKMKHEQPKGFLCNICGNGYSTKAVLDNHQRVHTGEKNYTCDICNKKFRFITTLKTHALVHSGEKPLSCPICSKQFRQHSHLNTHVKGQHSTNRPYQCSYCLKTFKQSCNLTVHTRIHTGETPYLCDICQKGFYDSSSMKKHRKGHLEKSSLAAAAWDKVDAIEVGVKLEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -