Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022561.1:61419864-61460079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.099 8.9 8.3 5.6 1 20 270 289 270 291 0.93

2 12 0.02 1.8 10.5 0.5 1 23 315 337 315 337 0.99

3 12 0.00032 0.029 16.2 2.5 1 23 356 378 356 378 0.97

4 12 0.14 13 7.8 1.3 1 23 397 418 397 418 0.90

5 12 6.5e-05 0.0058 18.3 0.4 2 23 425 446 424 446 0.96

6 12 0.00041 0.037 15.8 0.2 1 20 452 471 452 473 0.93

7 12 0.00019 0.017 16.9 1.6 1 23 480 502 480 502 0.98

8 12 2.2e-05 0.002 19.8 3.7 1 23 508 530 508 530 0.98

9 12 6.6e-05 0.0059 18.3 7.2 1 23 536 558 536 558 0.99

10 12 3.5e-05 0.0031 19.2 0.4 1 23 564 586 564 586 0.98

11 12 3.9e-05 0.0035 19.0 0.1 1 23 590 612 590 612 0.98

12 12 0.00025 0.022 16.5 0.1 1 23 620 643 620 643 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.099	8.9	8.3	5.6	1	20	270	289	270	291	0.93
2	12	0.02	1.8	10.5	0.5	1	23	315	337	315	337	0.99
3	12	0.00032	0.029	16.2	2.5	1	23	356	378	356	378	0.97
4	12	0.14	13	7.8	1.3	1	23	397	418	397	418	0.90
5	12	6.5e-05	0.0058	18.3	0.4	2	23	425	446	424	446	0.96
6	12	0.00041	0.037	15.8	0.2	1	20	452	471	452	473	0.93
7	12	0.00019	0.017	16.9	1.6	1	23	480	502	480	502	0.98
8	12	2.2e-05	0.002	19.8	3.7	1	23	508	530	508	530	0.98
9	12	6.6e-05	0.0059	18.3	7.2	1	23	536	558	536	558	0.99
10	12	3.5e-05	0.0031	19.2	0.4	1	23	564	586	564	586	0.98
11	12	3.9e-05	0.0035	19.0	0.1	1	23	590	612	590	612	0.98
12	12	0.00025	0.022	16.5	0.1	1	23	620	643	620	643	0.95

Sequence Information

Coding Sequence: ATGAGTCAGGAGGCGGCAATTGCCCCCATTGCCTCCCCTTGTATCCGTGCTTGGTGCCATGTTGTCATGCAACTAGAAGGGTTAAGCAGAAGCTATGCGAGTACCaagGAAACAGAACATGACGAAAATGTCGACGGTCAAGGAGAACAATTATCTGTTATGGAATACCATGCGGGGACGACTGACGACGATGCCTATGATGATGACGATCCGTTTGAGAATGAAGAAAGTATGGCGGTAAATTCCGAAAGCGTTGCCGATGCGTCAGGAAGAGGCAAATCCTGGCCAGAGACATTTCAGAGGGCAGAGGATCACATCTCCAAGGTACGTCTGTGGATGGATCAGAATCTTCTGACAATGAATGTAAACAAAACTGTTCATATGGCCTTTTCTATGAATAACCCAGGAGGTGTGATCCATCCTGAACTTAGGGtgcataattttgaatgtgTTATGGATATGTCAGTGTGCAGATGTGAAGAGACAATATTAGCAAAAGATAGTGTAAAATACCTGGGGGTATTCATTGACAAGAATCTAAGagcaggTTCCAGCGTGGGGCAAACAATTTCCGAACAAGTAATGGTGGACAAGACCGGAATGGGCTACACACGAAAAGTTGTTAAAGTGGGTACCGATTGGATAGCTGATAACCAGGATGCAGAGTCCGGTGGAAACAATTTGGCGGACGACAATGGAGAAATAGAACCTGACACAACGAAATATATAGTTGAGGAAGGAAAAGTACGGAAACTAACCGAAGAAGAGGCTGCCGCAATTGCCGATAAGGCGTCAATCATCGAGGTGCACAAGTGTCCGAATTGCGAACTGCAATTCCCAAATATGTCGCATTTTAAGAAACACAGTTGTAAGAACGCAAAACCCATCGTCAATAAGAAGGCTAAGCGAATGCAATTTCTCAAGATTAAAGAAGAGTTGAGATACCAGTGCACATTTTGTCTCTCCATATATTCAACCTTAATAGGTCTGAACGATCACATGAAATCACATTTGATTCAGGACGAAAGCGGTATGGTTCACAAGAAAACAATAACGATGACTCTTCATGTGTGTGAAATTTGCAATACGAAATTTCCGACTTACAAGCAGTTGAGGCTGCACAGTAGAATGCACGATCCCGTCAAAACGAAAGAAGTCGATCCGCCAGTCAACTCGGAGAGCGAGTCGTTCCAGTGTACCGTGTGCGAGAAAATGTACGACAAGAAATACGAAGAGGTCCATATGAAATCTCACGAGGAGCAGGAGCATACCGTTTGTCTGGTTTGTAACAGGAAGTTTGACAACAGGGAGAACCTAGAAATGCATATGAAAGCTCACTCCAATACCAAAAAGTTTGCTTGTTCCTATTGTAAAAAGCCGTTCAATAATTATTCGGCCTTAGAAGATCATGTCCTAAATCAGTGTCAGAAGAGGCAGTACGAATGTCAGTATTGCGGCAGGAGATTTGGTAGACCACATGAAAAGgttaaacACGAGAGGATTCATACCGGAGAAAAACCGCACGTGTGCCAGCTTTGTGGCAGAGCGTTTAGGGTCAGTTACtgcctcacgttgcacatgcgCACTCATACGAATACGAGACCGTATACTTGTCAGAATTGCGGCAAACGtTTTAAGTCACACAGTGTATTTAATCATCACATGCAAACCCACTCAGATGAGAGGAACTACAAGTGCCAGTTTTGTCCAAAAGCTTTTAAAACTGCGGTTCAATTGGCTGGACACAGAAATAGTCATACCAAACCTTTCTCCTGCACTGAATGTAATCGACCCTTCGCGTCCCTATACGCCGTGAGGGCGCACATGGAGACGCACAAAAGGGACAACAATCTGAAATTCGACTGCTGGATTTGCGGAGCAAGTTACGCTAGGTCGTTCGCGCTGCGAGATCACATGACTAGTGCGCATGGAGAGGCAGcaacagATAAAGTACCAGATGATAATGGTCTTGCAGAATTAGAAACTCCAACCGACGAAGCGGTGGAACATCTACAAAATGATATGGGGGAACATCATGGGGGCGATGAAGGAAAGCAAATAACAGTGGAAGGAGAGGACTATCATATGGCAGgcCCTGAAGGCGACGTTCACATTCTAAGTTCGCACGACGAAGGCGCCACAGAGGGTTACGTGGTACATCTGCAAGACGTTGAAAATAGTGAACACCAAGAAGGAAATCAGATGGAAGTCGTTGAAGCCTAA
Protein Sequence: MSQEAAIAPIASPCIRAWCHVVMQLEGLSRSYASTKETEHDENVDGQGEQLSVMEYHAGTTDDDAYDDDDPFENEESMAVNSESVADASGRGKSWPETFQRAEDHISKVRLWMDQNLLTMNVNKTVHMAFSMNNPGGVIHPELRVHNFECVMDMSVCRCEETILAKDSVKYLGVFIDKNLRAGSSVGQTISEQVMVDKTGMGYTRKVVKVGTDWIADNQDAESGGNNLADDNGEIEPDTTKYIVEEGKVRKLTEEEAAAIADKASIIEVHKCPNCELQFPNMSHFKKHSCKNAKPIVNKKAKRMQFLKIKEELRYQCTFCLSIYSTLIGLNDHMKSHLIQDESGMVHKKTITMTLHVCEICNTKFPTYKQLRLHSRMHDPVKTKEVDPPVNSESESFQCTVCEKMYDKKYEEVHMKSHEEQEHTVCLVCNRKFDNRENLEMHMKAHSNTKKFACSYCKKPFNNYSALEDHVLNQCQKRQYECQYCGRRFGRPHEKVKHERIHTGEKPHVCQLCGRAFRVSYCLTLHMRTHTNTRPYTCQNCGKRFKSHSVFNHHMQTHSDERNYKCQFCPKAFKTAVQLAGHRNSHTKPFSCTECNRPFASLYAVRAHMETHKRDNNLKFDCWICGASYARSFALRDHMTSAHGEAATDKVPDDNGLAELETPTDEAVEHLQNDMGEHHGGDEGKQITVEGEDYHMAGPEGDVHILSSHDEGATEGYVVHLQDVENSEHQEGNQMEVVEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -