Bpel029893.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:11790838-11794354[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.036 3.2 9.7 5.2 1 23 29 51 29 51 0.97 2 17 0.00059 0.053 15.3 0.5 1 23 57 79 57 79 0.97 3 17 8.2e-05 0.0074 18.0 3.2 2 23 87 108 86 108 0.97 4 17 8.2e-05 0.0073 18.0 0.3 2 23 115 137 114 137 0.95 5 17 0.094 8.4 8.4 5.5 1 23 172 194 172 194 0.98 6 17 0.00092 0.082 14.7 4.3 1 23 200 222 200 222 0.98 7 17 0.00014 0.013 17.3 0.3 1 23 229 251 229 251 0.99 8 17 0.0031 0.28 13.1 1.1 1 23 257 280 257 280 0.92 9 17 0.016 1.4 10.8 1.3 2 23 285 306 284 306 0.92 10 17 0.0014 0.12 14.2 0.2 2 21 317 336 316 337 0.94 11 17 0.00021 0.019 16.7 1.0 1 23 347 369 347 369 0.98 12 17 0.08 7.1 8.6 0.6 2 23 376 398 376 398 0.90 13 17 0.0005 0.045 15.6 0.0 2 23 404 425 403 425 0.96 14 17 0.32 29 6.7 0.4 2 12 431 440 430 450 0.75 15 17 0.0019 0.17 13.7 0.7 1 23 460 482 460 482 0.97 16 17 0.16 15 7.6 3.5 2 23 489 510 488 510 0.96 17 17 3.4e-06 0.00031 22.4 3.2 1 23 516 539 516 539 0.98
Sequence Information
- Coding Sequence
- ATGACCATAGAAGAGGATTCCATAGATGTTAAACCGTTCAATATCGGTATCAGCGAATCAAATCCTCTCATTCGCCAGCGAGCATTTTCCTGCTTCTTCTGCGAAGAATACTTTTCCAACACTCAACATCTAAAAAGTCATACGGAAAAGCACAGAAATAATGGGCTTTTTCAGTGTTCCATCTGTCTTAAGGCATTCAAAAATTTATGGGATATTAAGAAGCACTCTAACATACACGACCCCAACAGGAAAGCATTGCAATGCGAAGTGTGCTTTAAATTCTTTACTGTAAAACATAGTTTGATCAGTCATATGAAAAGACATAATAAAGAGTATTGTGTCGAGTGTGAACAATGCGGCAAAAAGTTCTTCAGACCGTCTGAGAAGGTTCGGCATATGGAAATAAGCCATAATGGAGAAAACCCAACGACCGACGAGGAAATCGAAGATATTAAACCGTTATATGTCAAAGTTATCTACGAGCCTGATGCAAGCGATGATCAACCAGTAGGCTTTACGTGCGTTATTTGCGAAAAGATATGTCTCACTAAGCACAAATTAAAAAGACATACAGAGACCCACAGAAAAAATGGACGGTTCCAATGCTCCCTATGTCAAAAAACTTACAAAAGGTACAAGGATATTAAGAAGCACTCGAACACACACGATCCTGATAGGAAAACGTATCAATGTCCAGTGTGCTTTAAGATATTGGCTCTCAAAGGCAGTTTGACGAGTCACATGAAAAGACATAATGAAGAATATGCTTATGAATGCGAAATTTGCCAAAAAAAGTTCTTTAGGCTGTCTGAAAAGAAAGACCATGTGGAAGAGAAGCACAATGGAGGGTTAATCTGTTCTCAATGCGGGGAACGTTTCAAATCGGCTAGAACACTACGTTTTCACAAAAATTACCACATCGACCCTAATTTTAAGAAGACTAATGTTAAGTGCGACTATTGTAAGAAATCATATTCTATGTTGACCGACATGAAACGTCACTTGATTGTATGTAAGGGAAGAACTCGGCTACCAACATTCCGTTGTGAAGTATGTCTTAAAAAGTTTAATGCGGAATCTACTTTGACTGATCATATGAAAAATCATTATAGCGAAATGACTGAGGAGTGTGAATACTGCAATCAGAAGTTCTTCAGTCTGTACGAAAAGAAACAGCATGTAGAAGAAGAACACAGTGATGACGGAGTACCTTGTCCTCAATGTGGAGAACGTTTCAACTCCGAACAAACCTTACTTGTACACGAAGAAACTCATAAAGAACTGAAAAAGCAATGCAACTATTGCCAAAAAATGTTtgctttaaattatataaaaagtcACATTAAAAGGTGCGATCAAAACACCGAtaaacaaacatttatttgtgaTACTTGTGGACGGGAATTTTATTGCGTCGATAATTTGAAGGTTCACATTCAAGTGCACAACAACGAGAAGCTTTTGGAGTGTGACGTTTGCCAGAGAAAATTCCTAAGGCATTTTACTCTTAGGATGCACAAACTTACTCATACAGGAGAAAAACCGTTTAAATGCGAATTTTGCGATAAATGTTTTACCCAACCGTCTGCTGTAAAAAGGCACAAAATGACCGTGCACTTGAAAGTTGTTAAGAATTCTGACAACTATGAATAG
- Protein Sequence
- MTIEEDSIDVKPFNIGISESNPLIRQRAFSCFFCEEYFSNTQHLKSHTEKHRNNGLFQCSICLKAFKNLWDIKKHSNIHDPNRKALQCEVCFKFFTVKHSLISHMKRHNKEYCVECEQCGKKFFRPSEKVRHMEISHNGENPTTDEEIEDIKPLYVKVIYEPDASDDQPVGFTCVICEKICLTKHKLKRHTETHRKNGRFQCSLCQKTYKRYKDIKKHSNTHDPDRKTYQCPVCFKILALKGSLTSHMKRHNEEYAYECEICQKKFFRLSEKKDHVEEKHNGGLICSQCGERFKSARTLRFHKNYHIDPNFKKTNVKCDYCKKSYSMLTDMKRHLIVCKGRTRLPTFRCEVCLKKFNAESTLTDHMKNHYSEMTEECEYCNQKFFSLYEKKQHVEEEHSDDGVPCPQCGERFNSEQTLLVHEETHKELKKQCNYCQKMFALNYIKSHIKRCDQNTDKQTFICDTCGREFYCVDNLKVHIQVHNNEKLLECDVCQRKFLRHFTLRMHKLTHTGEKPFKCEFCDKCFTQPSAVKRHKMTVHLKVVKNSDNYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -