Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022557.1:11363318-11371192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8e-05 0.0025 19.5 0.6 1 23 176 198 176 198 0.95

2 12 0.27 24 7.0 0.8 2 20 264 282 264 286 0.88

3 12 0.024 2.1 10.3 0.9 2 23 299 321 298 321 0.96

4 12 0.00042 0.038 15.8 2.4 1 23 330 352 330 352 0.98

5 12 3.6e-06 0.00033 22.3 1.4 1 22 367 388 367 388 0.96

6 12 8e-06 0.00072 21.2 2.6 1 23 403 425 403 425 0.97

7 12 2.2e-05 0.002 19.8 0.3 1 23 431 453 431 453 0.94

8 12 3.8e-05 0.0034 19.1 1.7 1 23 459 481 459 481 0.97

9 12 8.5e-07 7.6e-05 24.3 1.4 1 23 487 509 487 509 0.98

10 12 0.00017 0.015 17.0 1.4 1 23 515 537 515 537 0.98

11 12 2.2e-06 0.0002 23.0 1.2 1 23 543 565 543 565 0.98

12 12 3.8e-07 3.4e-05 25.4 0.5 1 23 571 593 571 593 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8e-05	0.0025	19.5	0.6	1	23	176	198	176	198	0.95
2	12	0.27	24	7.0	0.8	2	20	264	282	264	286	0.88
3	12	0.024	2.1	10.3	0.9	2	23	299	321	298	321	0.96
4	12	0.00042	0.038	15.8	2.4	1	23	330	352	330	352	0.98
5	12	3.6e-06	0.00033	22.3	1.4	1	22	367	388	367	388	0.96
6	12	8e-06	0.00072	21.2	2.6	1	23	403	425	403	425	0.97
7	12	2.2e-05	0.002	19.8	0.3	1	23	431	453	431	453	0.94
8	12	3.8e-05	0.0034	19.1	1.7	1	23	459	481	459	481	0.97
9	12	8.5e-07	7.6e-05	24.3	1.4	1	23	487	509	487	509	0.98
10	12	0.00017	0.015	17.0	1.4	1	23	515	537	515	537	0.98
11	12	2.2e-06	0.0002	23.0	1.2	1	23	543	565	543	565	0.98
12	12	3.8e-07	3.4e-05	25.4	0.5	1	23	571	593	571	593	0.99

Sequence Information

Coding Sequence: atggaAACTGAACAGATCGATTCAACACAAATTATCTGTAGAGTTTGTTTGGCCGAAACTGGAGAATTTCAGACAGTTTTCACCTCGGTAGAATTAGAGGAGACCAACAGCACAATGCATCTTTCTGAGATGATCTGTTCCTTCAGTCGTGTACAGATGACCCTAGGAGATGGTTTACCAGAACAAATTTGCATGTCTTGTGCAgaagaaacaataaaaatgtattttttcaagTTACGTTGTGAAGAAAGTGATAGACTGCTTCGAAAGAAGTTATTGGAGCCTCAGACAGGTCAAGATATCGCTCaagatagtttaaaaaaatcacctaAACCGAGAGATGAaagtacaaataatttaaatatggtaatggaaaatattgaagatacctTGCCAGAAAACAGTATTCTGGATACTTTTGAACAAagctttgaaaattttgattatgCTGATGATGTCACTGATGATGAAGAGGAGGTCAATTTCTATGAAACACAGAAGATCACTATAGAGAAAGTAAAAGAATTTGAATGTAGTGTTTGCCAGAAAAGGTTTACACGAGAAGATTTACTTTTACGACATAAAATTGCTCATGCAATGAAAATGGAAGATTTTAAAGAGGAAAATCATGACACTGAAGATGATACAGAGGAAGATAACCAGTCAGAAAACAATGACAAATTCAAACAttctgaaaatattaatattgaaaTTGATGGAACTTTTTCAATGGATGATCCCTCAAATACAATTATAGTAAAATCTGAAGACTGTGTGCAGCTTATGCCTTCATGTACTTTATGTTACCATGTATTTGTTAATGAAAAAGAACTAGATAAACACTTTGTTGAGGAACATTTGCAGATGTTAAAGACTGAGAATAAGGAAATCCTTGTTTGTAAAATATGTAACAATAGGATCAAAGACATTAGTGATTTTAGGAAAcatgttaaaaaatatcatactGATAAAGAGAGTGATCATAAATTTTCTTGTCCCTACTGTCTTATGAAATATACCAAAGAAGGACATCTCAAGAACCATTTGAAGGTTCACAAGCTGGAAACAAAACCACAGGAAAAGAATGAAATAACTGAATATCCATGTAAACATTGTAGTATGAGCTTCATTACCAAAGAAGAACTTAATAAACATATgagaaaaattagaatattaaGTAAGAAACTGGCGTCGAGAAAGAAACCACACATTTGTAAAATCTGTCTCAAAActtttaatcAAATCTCTAACCTCAAGGACCACCTCCGAACTCATAATGGTGACAAACCTTTCCTGTGTCCTAGCTGTGGAAAAGGTTTTAATCAATTAGgtaATTTAAGACAGCACCAGGTTCGGCATAGCGGCGTCAAGTCCCATATTTGTAGTACCTGTGGTACTGGCTTCGCAAGTAAAGGAGAACTACATGCACATTTAAGAAAACACACAGGTGTGAAACCTTTCGTTTGTGATACCTGCGGCAACAGCTTCACCACGTCCTCTTCCCTAACGAAACACAAAAGGATACATTCCGGAGAGAAACCGTACGAGTGCGATTACTGTAAAATGAAATTCTCCCGGTCCGGGATTTTATCGCGTCACCGACGCATCCATACGGGCGAGAAACCGTATGTATgcaatttctgtaaaaaaggaTTTACACAATCCAATGACTTAAACTCCCATTTGCGGATCCATACCGGGGAGAAGCCTTATGTCTGTGAAGAGTGCGGGCAACCTTTTAGGCAAAGTTCCGCGCTTAGGACCCATAAAAAGACTCATTCGGCACCGAGTGTCGGAAAGTCACACCAGAGGCCTCTTTTAGTTAAACTAGAAGAGAAGGTGTTTGTAGAAGAtcaggaagaaattttggttgtTCCATAA
Protein Sequence: METEQIDSTQIICRVCLAETGEFQTVFTSVELEETNSTMHLSEMICSFSRVQMTLGDGLPEQICMSCAEETIKMYFFKLRCEESDRLLRKKLLEPQTGQDIAQDSLKKSPKPRDESTNNLNMVMENIEDTLPENSILDTFEQSFENFDYADDVTDDEEEVNFYETQKITIEKVKEFECSVCQKRFTREDLLLRHKIAHAMKMEDFKEENHDTEDDTEEDNQSENNDKFKHSENINIEIDGTFSMDDPSNTIIVKSEDCVQLMPSCTLCYHVFVNEKELDKHFVEEHLQMLKTENKEILVCKICNNRIKDISDFRKHVKKYHTDKESDHKFSCPYCLMKYTKEGHLKNHLKVHKLETKPQEKNEITEYPCKHCSMSFITKEELNKHMRKIRILSKKLASRKKPHICKICLKTFNQISNLKDHLRTHNGDKPFLCPSCGKGFNQLGNLRQHQVRHSGVKSHICSTCGTGFASKGELHAHLRKHTGVKPFVCDTCGNSFTTSSSLTKHKRIHSGEKPYECDYCKMKFSRSGILSRHRRIHTGEKPYVCNFCKKGFTQSNDLNSHLRIHTGEKPYVCEECGQPFRQSSALRTHKKTHSAPSVGKSHQRPLLVKLEEKVFVEDQEEILVVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01241101;
90% Identity: -
80% Identity: -